PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G099200.3
Common NamePOPTR_0015s11130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 126aa    MW: 14122.9 Da    PI: 10.3057
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G099200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.83.8e-1299121123
                         ---SS-EEEEEEE--TT-SS-EE CS
                WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                         ldDgy+WrKYGqK+vk+s+fpr 
  Potri.015G099200.3  99 LDDGYRWRKYGQKTVKSSKFPRT 121
                         59********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-1384121IPR003657WRKY domain
SuperFamilySSF1182903.14E-1091122IPR003657WRKY domain
PROSITE profilePS5081114.52794125IPR003657WRKY domain
SMARTSM007740.004199125IPR003657WRKY domain
PfamPF031064.1E-8100121IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MPMEKYQIFL PVSGPSSPSV SPSSLNMANP LIYFHGDSEN GVKPESRFQH LDAKSSVSQT  60
SRICNGSEFK VKPGKRGGDS DDFRKHRYAF QTRSQVDILD DGYRWRKYGQ KTVKSSKFPR  120
TKIGC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.111830.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G099200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796130.0EF179613.1 (Populus tomentosa x P. bolleana) x P. tomentosa putative WRKY transcription factor 01 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322274.18e-74probable WRKY transcription factor 43
TrEMBLB9IFE42e-72B9IFE4_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11130.13e-73(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.12e-18WRKY DNA-binding protein 75