PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G104200.3
Common NamePOPTR_0015s11550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 336aa    MW: 37544.3 Da    PI: 8.4598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G104200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09184231455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Potri.015G104200.3 184 SHSLAERVRRERISERMKILQLLVPGC----DKITGKALMLDEIINYVQSLQ 231
                         8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-16178246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-10178235No hitNo description
PROSITE profilePS5088815.269180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15180245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-7184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-9186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGFSYQHQP LFPDSAFLPS IATPTKNMNN NMYGSFEEAG NMMNTNGFSQ IYSPETFHET  60
PSLDVRFHQS SHPDDHSYKV SLSDNETSLT KKQSTNSSTV VDKLESEHVT QEVTPMARKR  120
KSANGFLNSA QSKDARKVKS KRQNKCSGDM KHEEKKPKVE KKVHGEPPAG YIHVRARRGQ  180
ATDSHSLAER VRRERISERM KILQLLVPGC DKITGKALML DEIINYVQSL QNQVEFLSMK  240
LASVNPLLYD FGMDRDAFMV RPERLSSMSP PLPSLQHNSP IQPTAFADTA SATTATFATE  300
ENNYPLIDNS ATLFLQGMRP SDFTTHQWLP NVGCG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G104200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322296.20.0transcription factor bHLH137 isoform X3
TrEMBLB9IFJ20.0B9IFJ2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-50bHLH family protein