PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G105200.4
Common NamePOPTR_0015s11650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 494aa    MW: 53886.2 Da    PI: 6.158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G105200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11374416754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Potri.015G105200.4 374 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 416
                         79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16370436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9373416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-16374429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-12374420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MLSRLNSTSV WLEDHKEEQD STTNHLHHHH NNINNTTAAG CGGVMLEGRE EMGSLSTFKS  60
MLEVEDEWYV SNNNNTIHQT HQDSIKDLTF SPGLGDPDNL LLHQVDSSSS CSPSSSVFNN  120
LDPSQVHYFM HPKPSLSSLL NVVSNNPLEH GFDLSEIGYL ENQGTNSAAT ANVSALLNRG  180
GGVLGNLGNF SDLSSNSQIS IPNLCSDPQF SSSRMLQLPE NGPGLTSFRG FDENSGNQLF  240
LNRSKLLRPL ETYPSMGAQP TLFQKRAALR KNLGDNGGNL GLLSGIDRDK GKSEMTQISE  300
ENDKKRKFSS GDDFLEDVSI DGSGLNYDSD EFTENTKVEE IGKNGGISSK ANSGVTGGVD  360
QKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI EYLKELLQRI  420
NDLHNELEST PPSSSLTPTT SFHPLTPTPS ALPSRIMDKL CPSSLPSPNS QPARVIFSLL  480
CDVISLLSLV CPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363381KKKGLPAKNLMAERRRRKK
2375382ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.161760.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G105200.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4059660.0EF405966.1 Populus trichocarpa inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374570.10.0transcription factor ICE1
TrEMBLU5FSQ70.0U5FSQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-59bHLH family protein