PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G125500.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MIKC_MADS

Protein Properties

Length: 169aa MW: 19167.9 Da PI: 8.9428

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G125500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.2	3.2e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien + rqvtfskRr g++KK +ELSvLCdae+ +i+fss+g+l e++s Potri.015G125500.1 10 KIENRTARQVTFSKRRVGLFKKTHELSVLCDAEIGLIVFSSNGNLSEFCS 59 69**********************************************96 PP
2	K-box	55.1	3.2e-19	78	147	8	76
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 + e++++e+ +el++++ke++ Lq + R ++Ge+L+sL +++L +Le+qLe s++k+R++K+++ + + Potri.015G125500.1 78 RvSESNDSEQILKELKRIRKETDDLQLSMRCYKGESLSSLHYEDLVELEKQLECSVNKVRARKHQVATLE 147 44567888999******************************************************97654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.735	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.5E-36	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.10E-33	2	72	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.07E-27	3	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-25	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.7E-16	80	145	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	10.375	85	168	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MARGKIAITK IENRTARQVT FSKRRVGLFK KTHELSVLCD AEIGLIVFSS NGNLSEFCSE 60 SSSIPHIIKR YEISKGMRVS ESNDSEQILK ELKRIRKETD DLQLSMRCYK GESLSSLHYE 120 DLVELEKQLE CSVNKVRARK HQVATLEQQH DGEARGTAEN ARGIPVFW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-16	1	94	1	90	MEF2 CHIMERA
6byy_B	1e-16	1	94	1	90	MEF2 CHIMERA
6byy_C	1e-16	1	94	1	90	MEF2 CHIMERA
6byy_D	1e-16	1	94	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G125500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441917.1	3e-97	MADS-box protein defh21
Swissprot	Q9ATE5	9e-50	FBP24_PETHY; MADS-box protein FBP24
TrEMBL	A0A3N7G4R5	2e-95	A0A3N7G4R5_POPTR; Uncharacterized protein
STRING	POPTR_0015s14950.1	6e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4935	29	52
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.1	7e-51	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Potri.015G125500.1

Publications ? help Back to Top
Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]