PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G126500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 127aa    MW: 13863.9 Da    PI: 8.2201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G126500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.7e-12261131396
                         TT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEE CS
                  B3  13 sgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkv 96 
                         + rl++p +++  +   +g+  ++++ +  d+ g+ W++kl+  + ++ + v+++ W +Fvk++g+k+gD+v+++ +++  +e+++ ++v
  Potri.015G126500.1  26 EERLSVPASCLHFFpmpEGV--REIEFQAIDTLGKLWTFKLSCrSEGPPKPVIAGQWLSFVKDKGVKVGDTVTISQQNNgtNEGQYSISV 113
                         4789***9999555876656..67799999***********554555555************************9553223555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1211104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-1214104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.54314117IPR003340B3 DNA binding domain
CDDcd100171.24E-1514105No hitNo description
SMARTSM010190.00616117IPR003340B3 DNA binding domain
PfamPF023621.5E-826106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
DTTAEPSIRE PSIKVISKSL SRTDIEERLS VPASCLHFFP MPEGVREIEF QAIDTLGKLW  60
TFKLSCRSEG PPKPVIAGQW LSFVKDKGVK VGDTVTISQQ NNGTNEGQYS ISVSRKLFNV  120
LATLPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.96640.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G126500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1476200.0EF147620.1 Populus trichocarpa clone WS0123_N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374661.21e-88uncharacterized protein LOC18105924
TrEMBLA9PGX73e-87A9PGX7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s14860.14e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]