PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G134300.1
Common NamePOPTR_0015s14070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 247aa    MW: 27754.5 Da    PI: 8.3286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G134300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.99.1e-1472124155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++++h  +Er+RR+++ + ++ Lr llP  +   ++K s ++   +Av+YIk+Lq
  Potri.015G134300.1  72 KKMMHRDIERQRRQEMTTLYASLRALLPLEF--IKGKRSISDHMNEAVNYIKYLQ 124
                         6899*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1468139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-1169128No hitNo description
PROSITE profilePS5088813.96771123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-1172124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1073139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-577129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MFPLHQGGEL CFKISSSPHQ QDNIPDLILA HQYAEIHGST DITNNMEKGR RRNIISMDNN  60
EAARDNNNNS KKKMMHRDIE RQRRQEMTTL YASLRALLPL EFIKGKRSIS DHMNEAVNYI  120
KYLQKKIKET SAKRDELKKL SDFSSVASPS GCSNKSSSSS VALQPYPGGI EITFDSDLMG  180
RDLPLSRVLQ VLLEEGISVI NCVSTKVNER LFHSVQTEVN DPTCLNLSEL WQKLTLVVSS  240
TSDLSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G134300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321864.10.0transcription factor bHLH36 isoform X2
TrEMBLB9ICZ30.0B9ICZ3_POPTR; Uncharacterized protein
STRINGPOPTR_0015s14070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.14e-44bHLH family protein