PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G134400.1
Common NamePOPTR_0015s14050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 248aa    MW: 27845.1 Da    PI: 5.9889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G134400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-1075127155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +++a +e+Er+RR+++ +  + Lr llP+ +    +++ s ++   +Av++Ik+L+
  Potri.015G134400.1  75 KKVARKEIERQRRQQMSTLHASLRNLLPPdS---IKGRRSISDHMSEAVKCIKHLK 127
                         68899************************55...********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1073142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.00474126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-774131No hitNo description
PfamPF000102.0E-775126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-876142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFPFQQSYDE FWSQISSNPY QEDIDQDQHQ ILGQDSLHGI SNLNNSSVEE VPQAHTILAT  60
SNANDDSGNI RCDEKKVARK EIERQRRQQM STLHASLRNL LPPDSIKGRR SISDHMSEAV  120
KCIKHLKSNI QDLSVKRDKL KNLSSSSTFE HGTEISDHNL LDSVTVRHYL DGLEIVLTRG  180
PGEEGILLSR VLEAVLEEGF DVVGCTSTQK GQRHYTTIQC QASNLNCIDA DRLKGKLIDV  240
ISLSRYE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G134400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321866.10.0transcription factor bHLH118
TrEMBLB9ICZ50.0B9ICZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0015s14050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-29bHLH family protein