PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G135900.1
Common NamePOPTR_0015s13870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 103aa    MW: 11517.3 Da    PI: 9.1344
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G135900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.85.7e-4111001100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C++dC+++pyfp+++p++fa+vh+++Gasnv k+l++lp + r +a++sl+yeA++r++dPvyG+vg+++ l+qq+++++
  Potri.015G135900.1   1 RCAACKYLRRRCPSDCIFSPYFPSNNPRRFACVHRIHGASNVAKMLQQLPAHLRAEAANSLYYEAQCRTQDPVYGCVGILSLLHQQIHSVE 91 
                         6****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++la++++e
  Potri.015G135900.1  92 SQLAKTRAE 100
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.3771101IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-40198IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
RCAACKYLRR RCPSDCIFSP YFPSNNPRRF ACVHRIHGAS NVAKMLQQLP AHLRAEAANS  60
LYYEAQCRTQ DPVYGCVGIL SLLHQQIHSV ESQLAKTRAE IA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37210112111LOB family transfactor Ramosa2.1
5ly0_B3e-37210112111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G135900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318256.25e-67LOB domain-containing protein 24
SwissprotP594687e-52LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2K1XMJ73e-69A0A2K1XMJ7_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0015s13870.13e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-54LOB domain-containing protein 24