PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G138200.1

Common Name

POPTR_0015s13660g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 328aa MW: 35305.3 Da PI: 6.5637

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G138200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.9	2.6e-36	84	171	4	90
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 k+ ++++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++ + ++++ ++a Potri.015G138200.1 84 PKRNTKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAVsVNGTLKIPTESPATAAA 171 5899**********************************************************77777444211122211111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.5E-30	87	180	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.187	88	142	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDSQNHHHHT IEEIDQEHSI TVANVSNQPD PTTLQLKEEA LTDPEESREL EEHDNNIRRI 60 NNGSSNSCLV VHQVQRQQEV VMAPKRNTKD RHTKVEGRGR RVRMPATCAA RIFQLTRELG 120 HKSDGETIRW LLEHAEPAII AATGTGTVPA IAVSVNGTLK IPTESPATAA ADSDADGLVH 180 KKKRKRPCNS DFVDLTEAAH QNSVSSGLAP IASTSPQGLV PLWPMGTFMF PQGSSVGVGG 240 SNQAQFWAFP ATSTTPFFNM AARPISSFVS AMQPGVQLAG SSTGGGGGGG GAQMLRDFSL 300 EIYDKKELQF LSHPVNHDHQ QAPCSES*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00064	PBM	Transfer from AT5G51910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G138200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024442051.1	0.0	transcription factor TCP19
Swissprot	Q9LT89	7e-89	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A3N7G1I0	0.0	A0A3N7G1I0_POPTR; Uncharacterized protein
STRING	POPTR_0015s13660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86
Representative plant	OGRP3178	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	7e-86	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.015G138200.1
Entrez Gene	7474020