PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G143400.1
Common NamePOPTR_0015s13190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 208aa    MW: 23333.7 Da    PI: 4.5074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G143400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.2e-122291948
                        TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                        lG++ W+ Ia++++ gRt++++k++w++yl
  Potri.015G143400.1  2 LGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 29
                        8999.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.862133IPR017930Myb domain
PfamPF002497.6E-10129IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-10237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-15230IPR009057Homeodomain-like
CDDcd001676.15E-8429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MLGNKWSQIA QHLPGRTDNE IKNHWHSYLK KNLLKDEGME SLKRTKSDSS NSDIMELSPS  60
PKRLKMQASS FESSMSAEKS SADINRSVPQ MFESPNEPKG SSLLPKVMFA EWLSLESFAS  120
LGEPMDSKTT LDHNTIFQDN FLHDYLLDER AFGGEYHNSL SDGSSGDIFS SEFRFESQSP  180
GNEFDFSSGE DLCSDFNLSN ISDVMYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944ESLKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G143400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321912.31e-148LOW QUALITY PROTEIN: transcription factor LAF1
TrEMBLA0A2K1XMX41e-148A0A2K1XMX4_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13190.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-14myb domain protein 19