PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G018600.1
Common NamePOPTR_0016s02010g, TINYL18
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 215aa    MW: 22378.9 Da    PI: 4.5433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G018600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-165098355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ++GVr+++ +g+Wv+eIr+p+    +  r++lg+f  +e+Aa a++ a+++l+g
  Potri.016G018600.1 50 FRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPNPEMAAVAYDVAALALKG 98
                        89***888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.9E-2949108IPR001471AP2/ERF domain
SMARTSM003804.8E-3349112IPR001471AP2/ERF domain
PROSITE profilePS5103221.77349106IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1950108IPR016177DNA-binding domain
CDDcd000182.08E-3050108No hitNo description
PfamPF008478.6E-95098IPR001471AP2/ERF domain
PRINTSPR003672.1E-105061IPR001471AP2/ERF domain
PRINTSPR003672.1E-1088108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQDSQPTKTS SPNISSSSGS SGSRTASASA SAAVIAGAVA PRVSGSQRAF RGVRRRSSGK  60
WVSEIREPKK PNRIWLGTFP NPEMAAVAYD VAALALKGQN ADLNFPNSAA SLPVPASTSP  120
RDIQAAAASA AAAIGAAKDA LGIPNMGDTN QMEQEITPTV DDQFVDEDLI FDMPNVLVNM  180
AEGMLLSPPR LDIAGDETTT AYDNTGDQNL WKFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1443108874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G018600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559370.0EF155937.1 Populus trichocarpa TINY-like protein (TINYL18) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322550.11e-153ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-50ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA9PL871e-152A9PL87_POPTR; TINY-like protein
STRINGPOPTR_0016s02010.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-41ERF family protein