PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G018900.1
Common NamePOPTR_0016s02030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 437aa    MW: 47217.6 Da    PI: 5.4265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G018900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.82.8e-115744333374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          lLl+cAe+v+ ++l+ a+ lL ++ el+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l +++ + ++s++ ++al+ ++ +sP++kf
  Potri.016G018900.1  74 GLLLQCAECVAMDNLNDATDLLPEIAELSSPFGSSPERVGAYFAHALQARVVGSCLGTYSPLVSKSVTLTQSQRLFNALQSYNSISPLVKF 164
                         58******************************************************************99********************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         sh+taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k
  Potri.016G018900.1 165 SHFTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPLEGK 251
                         ********************************************************....9**************************9777 PP

                GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                           +  +l++L v+p+Ea++V++++  h l+d ++s       +Lkl+  l+Pk+++ veq+++h ++sFl rf+eal+yysalfd+l  +l
  Potri.016G018900.1 252 IGNVTDLSQLGVRPREAIVVHWMH--HCLYDVTGSDLG----TLKLLTLLRPKLITTVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGL 335
                         777779*****************9..888888888888....**********************.789*********************** PP

                GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         + +s er++vE++l+g ei+n+va  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +
  Potri.016G018900.1 336 GVDSVERHMVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGDELRRVGFEPVSLGGSPAAQASLLLGMFPWKGYTLVEENGSLKLGWKDLS 425
                         *****************************998887.9****************************************************** PP

                GRAS 367 LvsvSaWr 374
                         L+++SaW+
  Potri.016G018900.1 426 LLTASAWQ 433
                         *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.14746413IPR005202Transcription factor GRAS
PfamPF035149.5E-11374433IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MLQSLIPQSP INSTDPNNSS SPSMKSKRAA ADLTAGDSSG EDPSSKRVSY EKPTTEIDCV  60
GDDGGEASGL RLLGLLLQCA ECVAMDNLND ATDLLPEIAE LSSPFGSSPE RVGAYFAHAL  120
QARVVGSCLG TYSPLVSKSV TLTQSQRLFN ALQSYNSISP LVKFSHFTAN QAIFQALDGE  180
DRVHVIDLDI MQGLQWPGLF HILASRPKKI RSMRITGFGS SSELLESTGR RLADFASSLG  240
LPFEFHPLEG KIGNVTDLSQ LGVRPREAIV VHWMHHCLYD VTGSDLGTLK LLTLLRPKLI  300
TTVEQDLSHG GSFLGRFVEA LHYYSALFDA LGDGLGVDSV ERHMVEQQLF GCEIRNIVAV  360
GGPKRTGEVK VERWGDELRR VGFEPVSLGG SPAAQASLLL GMFPWKGYTL VEENGSLKLG  420
WKDLSLLTAS AWQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1657843424379Protein SCARECROW
5b3h_D1e-1657843424379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.162950.0bud| catkin
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G018900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323179.20.0scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2K1X9C00.0A0A2K1X9C0_POPTR; GRAS family protein
STRINGPOPTR_0016s02030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-180GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]