PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G018900.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 398aa    MW: 42887.7 Da    PI: 4.9417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G018900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS41.32.4e-1374127356
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                          lLl+cAe+v+ ++l+ a+ lL ++ el+sp g++ +R+ ayf+ AL+ar+++s
  Potri.016G018900.2  74 GLLLQCAECVAMDNLNDATDLLPEIAELSSPFGSSPERVGAYFAHALQARVVGS 127
                         58*************************************************985 PP
2GRAS285.12e-8712639494374
                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         +  +aNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k
  Potri.016G018900.2 126 GSCLANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPLEGK 212
                         6689****************************************************....9**************************9777 PP

                GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                           +  +l++L v+p+Ea++V++++  h l+d ++s       +Lkl+  l+Pk+++ veq+++h ++sFl rf+eal+yysalfd+l  +l
  Potri.016G018900.2 213 IGNVTDLSQLGVRPREAIVVHWMH--HCLYDVTGSDLG----TLKLLTLLRPKLITTVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGL 296
                         777779*****************9..888888888888....**********************.789*********************** PP

                GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         + +s er++vE++l+g ei+n+va  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +
  Potri.016G018900.2 297 GVDSVERHMVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGDELRRVGFEPVSLGGSPAAQASLLLGMFPWKGYTLVEENGSLKLGWKDLS 386
                         *****************************998887.9****************************************************** PP

                GRAS 367 LvsvSaWr 374
                         L+++SaW+
  Potri.016G018900.2 387 LLTASAWQ 394
                         *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.4421374IPR005202Transcription factor GRAS
PfamPF035146.8E-85126394IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MLQSLIPQSP INSTDPNNSS SPSMKSKRAA ADLTAGDSSG EDPSSKRVSY EKPTTEIDCV  60
GDDGGEASGL RLLGLLLQCA ECVAMDNLND ATDLLPEIAE LSSPFGSSPE RVGAYFAHAL  120
QARVVGSCLA NQAIFQALDG EDRVHVIDLD IMQGLQWPGL FHILASRPKK IRSMRITGFG  180
SSSELLESTG RRLADFASSL GLPFEFHPLE GKIGNVTDLS QLGVRPREAI VVHWMHHCLY  240
DVTGSDLGTL KLLTLLRPKL ITTVEQDLSH GGSFLGRFVE ALHYYSALFD ALGDGLGVDS  300
VERHMVEQQL FGCEIRNIVA VGGPKRTGEV KVERWGDELR RVGFEPVSLG GSPAAQASLL  360
LGMFPWKGYT LVEENGSLKL GWKDLSLLTA SAWQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1427839525380Protein SCARECROW
5b3h_A1e-1427839524379Protein SCARECROW
5b3h_D1e-1427839524379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.162950.0bud| catkin
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G018900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442976.10.0scarecrow-like protein 23 isoform X2
SwissprotQ9FHZ11e-166SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2K1X9C00.0A0A2K1X9C0_POPTR; GRAS family protein
STRINGPOPTR_0016s02030.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-153GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]