PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G024000.2
Common NamePOPTR_0016s02460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 258aa    MW: 28755.1 Da    PI: 6.3169
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G024000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.63.1e-14187229547
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                         ++++r++kNRe+A rsR+R++a++ eLe kv  Le+eN++L+ 
  Potri.016G024000.2 187 RKQKRMIKNRESAARSRARRQAYTNELEIKVYHLEEENERLRR 229
                         689**************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-13181230No hitNo description
SMARTSM003381.7E-11183255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.128185230IPR004827Basic-leucine zipper domain
PfamPF001707.3E-12187230IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-10187232No hitNo description
PROSITE patternPS000360190205IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGSQVGSFEE ENPESLIGQG SLYSLTLDEV QNQLGNLGKP LGSMNLDELL KSVDTEGSWS  60
SPVHRQGSLT LSRSLSKKTV EEVWRNIQQE NKKDAENQER NAPFGEMTLE DFLVKAGVVT  120
ESAPQQQQES FMQGHPVQQS LPVADAAYPN SQMNLSPSSL MGTLSDTQTP GRKRVASGDV  180
AEKTVERKQK RMIKNRESAA RSRARRQAYT NELEIKVYHL EEENERLRRQ KEVEKVLPCA  240
PPPEPKSQLR RTSSASF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G024000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443418.11e-174ABSCISIC ACID-INSENSITIVE 5-like protein 2
RefseqXP_024443419.11e-174ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES35e-95AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2K1X9K81e-173A0A2K1X9K8_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02460.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.11e-80ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]