PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G025800.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 1264aa MW: 145161 Da PI: 5.0982

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G025800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	176.5	2e-54	8	350	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 L+ cA+a++ g l a++lLa ++ las++ +++++yf+eAL +r ++ + pp + ++ l+ ++k+ Potri.016G025800.1 8 ILMVCAKAIEGGRLDVADSLLAVIQSLASKEEsIWRRKVVKYFAEALVRRAYG-------IRPPFPLPS---LPF-----LYEPEATLYKL 83 6999***********************999446678***********9.......345555551...111.....2333445789 PP GRAS 94 shltaNqaIleavege.ervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 + +t + I +++++ +r+HiiDf+i q W L++ L + +g s+ iT + + s++++ l+e ++ A+ +++++ + Potri.016G025800.1 84 ARVTSEHGIADSLNSGyKRLHIIDFSIVfQFWRWNYLIEGLKRQYGGLQSVLITSITLKLSKHTDYLREN----RECAKGRNLELRQLI-C 169 **********98766*****9835679******99*********666666666665....468888887776554.3 PP GRAS 183 akrledl.eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 + + + +++Lr k+ +E+++Vn+ + lh+ll++++++e+ vL+ vk+l ++++v+veqea++ns+++ er+ ++++yys +f+sl Potri.016G025800.1 170 NSPDDIVnCISKLRRKSeDEVVVVNWNFILHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPDLSERLEQSFQYYSPFFESL 256 444444434799998888********************....***************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+ + + ++ +++++r+i nvvaceg +r+er e++++W++r+ +aGF pvp + + +++ l+ v+ +r+ee++g ++l W Potri.016G025800.1 257 EEDY-----DSDVLWEMYFRRQIGNVVACEGVDRVERIESFAQWKNRICQAGFCPVPQQVD-KLKIDFGLNLVD---HRIEEKEGHILLLW 338 9994.....666777788**********************************97655.456788888887...78******** PP GRAS 363 kdrpLvsvSaWr 374 ++ pL ++S+W+ Potri.016G025800.1 339 HGFPLAVASVWK 350 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	29.221	1	334	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.1E-52	8	350	IPR005202	Transcription factor GRAS
PROSITE profile	PS50808	10.526	663	719	IPR003656	Zinc finger, BED-type
SMART	SM00614	7.4E-12	663	714	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	2.14E-7	666	719	No hit	No description
Pfam	PF02892	2.5E-5	667	711	IPR003656	Zinc finger, BED-type
SuperFamily	SSF53098	8.34E-45	806	1260	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	1.1E-16	1033	1130	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	2.4E-12	1179	1259	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1264 aa Download sequence Send to blast
MAAPLSCILM VCAKAIEGGR LDVADSLLAV IQSLASKEES IWRRKVVKYF AEALVRRAYG 60 IRPPFPLPSL PFLYEPEATL YKLARVTSEH GIADSLNSGY KRLHIIDFSI VFQFWRWNYL 120 IEGLKRQYGG LQSVLITSIT LKLSKHTDYL RENRECAKGR NLELRQLICN SPDDIVNCIS 180 KLRRKSEDEV VVVNWNFILH KLLAQDGAME QVLSKVKDLG ADIMVIVEQE ANLNSPDLSE 240 RLEQSFQYYS PFFESLEEDY DSDVLWEMYF RRQIGNVVAC EGVDRVERIE SFAQWKNRIC 300 QAGFCPVPQQ VDKLKIDFGL NLVDHRIEEK EGHILLLWHG FPLAVASVWK FTGPPQFSGG 360 LYTMQDTVDD SEGMASSSES EDDEENDSLV SIMADRNLWS TQGSSMKRIA ASAKLYDILE 420 YICHLHRLPL AVTWISYGQD GNTNSKGKRI LCIDDSACYV NHWKMDRFVD EYARYRLEEG 480 QGIAGKALQS NIHIQHDISL LDPAEFLDED YGPSWCHEDY HAAFAIRLTS THPCKDDYVL 540 EFLLPIFRMK DTSELVLLIN KVLRTLQRKC LKMWEVSVRE VHEASGSEVR LDDERMPNIP 600 HEDGVLEGNE FMAVNPTSNQ AEETREPLEQ DVQEQSAIPA PALNGENASL SVDGGFQSTN 660 KRRKISAVWD GFVKHTAENG EEWATCNYCK KEYRAESKRG TSNLHKHLKN CSPSRQDEAE 720 QQILVGSGDL STSVIQRNFV IDQERSRLDI ATMIIKHGYP LDMVQHEFFE IFVKNLQPVF 780 KLYSRDVVEA DVLSICRQEK EKLISFFDNL SCLLSLTLEL RSSNDNMMTY CCFTVHFIDD 840 GWQLKKKILA FRNLRYNYDM GTVHEVFNSV LTEWSINKNV RFIFLDVTPP KDHTIGELRS 900 KVSDQAPPIH GHLFCVPSYA QILSLLAQDG FSETRSVLYK IRECIEYVKG SSLVRQKFLE 960 AINNGSLQDR EMPTLDVPAR WDTTFLMLES SLEFRTAFNH LEQLDDDFKV NPSAEEWNKA 1020 TVVFECLKEF CKSTCNFPTS REDYFLNVGD VYKNLLKWEQ SDYVYVRAMA NRMKGKFDEY 1080 WGEASLALGI SVVLNPSYKL DIFEYYQQIY GSDADLRYYQ KFLDNLICEY NKYAKDFRSQ 1140 GPSSSAMADV SRCTSSYISF KEWRKGKYER NMVHSQWNEL DQYLQLPPPE NLDKDGNVLA 1200 WWQDNAQNFP ILGKMARDFL AIPVSTIISK SSEVMKMASV HDGVRPEIAE DLICGKDWLD 1260 SPN*

Sequence ? help Back to Top

Protein Sequence Length: 1264 aa Download sequence Send to blast

MAAPLSCILM VCAKAIEGGR LDVADSLLAV IQSLASKEES IWRRKVVKYF AEALVRRAYG  60
IRPPFPLPSL PFLYEPEATL YKLARVTSEH GIADSLNSGY KRLHIIDFSI VFQFWRWNYL  120
IEGLKRQYGG LQSVLITSIT LKLSKHTDYL RENRECAKGR NLELRQLICN SPDDIVNCIS  180
KLRRKSEDEV VVVNWNFILH KLLAQDGAME QVLSKVKDLG ADIMVIVEQE ANLNSPDLSE  240
RLEQSFQYYS PFFESLEEDY DSDVLWEMYF RRQIGNVVAC EGVDRVERIE SFAQWKNRIC  300
QAGFCPVPQQ VDKLKIDFGL NLVDHRIEEK EGHILLLWHG FPLAVASVWK FTGPPQFSGG  360
LYTMQDTVDD SEGMASSSES EDDEENDSLV SIMADRNLWS TQGSSMKRIA ASAKLYDILE  420
YICHLHRLPL AVTWISYGQD GNTNSKGKRI LCIDDSACYV NHWKMDRFVD EYARYRLEEG  480
QGIAGKALQS NIHIQHDISL LDPAEFLDED YGPSWCHEDY HAAFAIRLTS THPCKDDYVL  540
EFLLPIFRMK DTSELVLLIN KVLRTLQRKC LKMWEVSVRE VHEASGSEVR LDDERMPNIP  600
HEDGVLEGNE FMAVNPTSNQ AEETREPLEQ DVQEQSAIPA PALNGENASL SVDGGFQSTN  660
KRRKISAVWD GFVKHTAENG EEWATCNYCK KEYRAESKRG TSNLHKHLKN CSPSRQDEAE  720
QQILVGSGDL STSVIQRNFV IDQERSRLDI ATMIIKHGYP LDMVQHEFFE IFVKNLQPVF  780
KLYSRDVVEA DVLSICRQEK EKLISFFDNL SCLLSLTLEL RSSNDNMMTY CCFTVHFIDD  840
GWQLKKKILA FRNLRYNYDM GTVHEVFNSV LTEWSINKNV RFIFLDVTPP KDHTIGELRS  900
KVSDQAPPIH GHLFCVPSYA QILSLLAQDG FSETRSVLYK IRECIEYVKG SSLVRQKFLE  960
AINNGSLQDR EMPTLDVPAR WDTTFLMLES SLEFRTAFNH LEQLDDDFKV NPSAEEWNKA  1020
TVVFECLKEF CKSTCNFPTS REDYFLNVGD VYKNLLKWEQ SDYVYVRAMA NRMKGKFDEY  1080
WGEASLALGI SVVLNPSYKL DIFEYYQQIY GSDADLRYYQ KFLDNLICEY NKYAKDFRSQ  1140
GPSSSAMADV SRCTSSYISF KEWRKGKYER NMVHSQWNEL DQYLQLPPPE NLDKDGNVLA  1200
WWQDNAQNFP ILGKMARDFL AIPVSTIISK SSEVMKMASV HDGVRPEIAE DLICGKDWLD  1260
SPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-12	12	349	25	377	Protein SCARECROW
5b3h_D	4e-12	12	349	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G025800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213918	0.0	AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443926.1	0.0	uncharacterized protein LOC7458891
TrEMBL	A0A3N7G5D1	0.0	A0A3N7G5D1_POPTR; Uncharacterized protein
STRING	POPTR_0016s02730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15568	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	6e-52	GRAS family protein

Link Out ? help Back to Top
Phytozome	Potri.016G025800.1