PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G025800.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 1045aa    MW: 120499 Da    PI: 5.4266
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G025800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS143.22.7e-4483004320
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          L+ cA+a++ g l  a++lLa ++ las++     +++++yf+eAL +r ++       + pp + ++           l+     ++k+
  Potri.016G025800.2   8 ILMVCAKAIEGGRLDVADSLLAVIQSLASKEEsIWRRKVVKYFAEALVRRAYG-------IRPPFPLPS---LPF-----LYEPEATLYKL 83 
                         6999*************************999446678**************9.......345555551...111.....2333445789* PP

                GRAS  94 shltaNqaIleavege.ervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         + +t  + I +++++  +r+HiiDf+i  q   W  L++ L  + +g  s+ iT +  + s++++ l+e     ++ A+  +++++  +  
  Potri.016G025800.2  84 ARVTSEHGIADSLNSGyKRLHIIDFSIVfQFWRWNYLIEGLKRQYGGLQSVLITSITLKLSKHTDYLREN----RECAKGRNLELRQLI-C 169
                         ************98766*********9835679**********99*************666666666665....468888887776554.3 PP

                GRAS 183 akrledl.eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +  + +  +++Lr k+ +E+++Vn+ + lh+ll++++++e+    vL+ vk+l ++++v+veqea++ns+++ er+ ++++yys +f+sl
  Potri.016G025800.2 170 NSPDDIVnCISKLRRKSeDEVVVVNWNFILHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPDLSERLEQSFQYYSPFFESL 256
                         444444434799998888************************....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                         e+ +     +  ++ +++++r+i nvvaceg +r+er e++++W++r+ 
  Potri.016G025800.2 257 EEDY-----DSDVLWEMYFRRQIGNVVACEGVDRVERIESFAQWKNRIY 300
                         9994.....666777788****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.3311334IPR005202Transcription factor GRAS
PfamPF035149.2E-428300IPR005202Transcription factor GRAS
SMARTSM006147.4E-12444495IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.526444500IPR003656Zinc finger, BED-type
SuperFamilySSF576671.67E-7447500No hitNo description
PfamPF028922.0E-5448492IPR003656Zinc finger, BED-type
SuperFamilySSF530985.31E-455871041IPR012337Ribonuclease H-like domain
PfamPF143728.7E-17814911IPR025525hAT-like transposase, RNase-H fold
PfamPF056991.9E-129601040IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1045 aa     Download sequence    Send to blast
MAAPLSCILM VCAKAIEGGR LDVADSLLAV IQSLASKEES IWRRKVVKYF AEALVRRAYG  60
IRPPFPLPSL PFLYEPEATL YKLARVTSEH GIADSLNSGY KRLHIIDFSI VFQFWRWNYL  120
IEGLKRQYGG LQSVLITSIT LKLSKHTDYL RENRECAKGR NLELRQLICN SPDDIVNCIS  180
KLRRKSEDEV VVVNWNFILH KLLAQDGAME QVLSKVKDLG ADIMVIVEQE ANLNSPDLSE  240
RLEQSFQYYS PFFESLEEDY DSDVLWEMYF RRQIGNVVAC EGVDRVERIE SFAQWKNRIY  300
YHAAFAIRLT STHPCKDDYV LEFLLPIFRM KDTSELVLLI NKVLRTLQRK CLKMWEVSVR  360
EVHEASGSEV RLDDERMPNI PHEDGVLEGN EFMAVNPTSN QAEETREPLE QDVQEQSAIP  420
APALNGENAS LSVDGGFQST NKRRKISAVW DGFVKHTAEN GEEWATCNYC KKEYRAESKR  480
GTSNLHKHLK NCSPSRQDEA EQQILVGSGD LSTSVIQRNF VIDQERSRLD IATMIIKHGY  540
PLDMVQHEFF EIFVKNLQPV FKLYSRDVVE ADVLSICRQE KEKLISFFDN LSCLLSLTLE  600
LRSSNDNMMT YCCFTVHFID DGWQLKKKIL AFRNLRYNYD MGTVHEVFNS VLTEWSINKN  660
VRFIFLDVTP PKDHTIGELR SKVSDQAPPI HGHLFCVPSY AQILSLLAQD GFSETRSVLY  720
KIRECIEYVK GSSLVRQKFL EAINNGSLQD REMPTLDVPA RWDTTFLMLE SSLEFRTAFN  780
HLEQLDDDFK VNPSAEEWNK ATVVFECLKE FCKSTCNFPT SREDYFLNVG DVYKNLLKWE  840
QSDYVYVRAM ANRMKGKFDE YWGEASLALG ISVVLNPSYK LDIFEYYQQI YGSDADLRYY  900
QKFLDNLICE YNKYAKDFRS QGPSSSAMAD VSRCTSSYIS FKEWRKGKYE RNMVHSQWNE  960
LDQYLQLPPP ENLDKDGNVL AWWQDNAQNF PILGKMARDF LAIPVSTIIS KSSEVMKMAS  1020
VHDGVRPEIA EDLICGKDWL DSPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G025800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014360.10.0PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
STRINGPOPTR_0016s02730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-44GRAS family protein