PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G026300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 909aa    MW: 104812 Da    PI: 6.9514
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G026300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS40.15.7e-13259287344
                GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                         +++++r+i nvvaceg +r+er e++++W++rl++aGF pvp + + ++ + +  + +
  Potri.016G026300.1   2 EMYFRRQIGNVVACEGVDRVERIESFAHWQNRLSQAGFCPVPQQGSSMNRIAASAKLF 59 
                         689***************************************9998888776666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.982169IPR005202Transcription factor GRAS
PfamPF035142.0E-10259IPR005202Transcription factor GRAS
SuperFamilySSF530988.34E-49331757IPR012337Ribonuclease H-like domain
PfamPF143722.0E-19563661IPR025525hAT-like transposase, RNase-H fold
PfamPF056994.8E-10710762IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MEMYFRRQIG NVVACEGVDR VERIESFAHW QNRLSQAGFC PVPQQGSSMN RIAASAKLFD  60
ILEYICDLHR LELGVTWISY GQDGNTNSKG KRILCIDDSA CYVNNWVMAK FVDEYARHRL  120
EEGQGIAGKA LQSNIHIQHD IYLLDPSEFP DSCSFSSSWI RKWYAAFAIR LTSTHPCKDD  180
YVLEFLLPVD MTDRTELLIN KVLRTLQRKC LKLWEVSVRE VNEASGSEGR LDDEKMPNIP  240
RETREPLEQD VQEQSAIPAP ALNGENASLS IDGGLQSTNK RRKISAVWEE NGEVWATCKY  300
CKKTYLQPLF ELHSKDEVTD DVLTIYRREK EKLIKYFDKL SCLLSLSIEL WSSNDKMMTY  360
CCFTVHFIDD GWQLKKKILA FRNLRYNYDM GAVHEVFKHV LTEWSINKNV SFIFLDITPP  420
KDHMIGELRS KVSDQAPPIH RHLFCVPSYA QILGLLVQDG FSEIRSVLYK IRECIEYVKG  480
SSLIRQKFQE AINNGSLQDR EMPTLDVPAR WDTTFLMLES SLEFITAFNH LEQLDDAFKV  540
NPSAEEWNKA TAVFECLKEF YKSTCNFPTS RDDYFLSVRD VYKNLQGWKQ SDYVYVRAMA  600
NRMKGKFDEY WGEASLALGI SAVLDPSYKL DIIEYGYRQI YGSDAYLRYY QKFLDNLICE  660
YNKYAKDFRS QGPSSSAMAD VSRCTSSYNS FKEWRKGKYE RNTVHSQWNE LVQYLEKRPE  720
NLDKDGNVLA WWLDNAQNFP ILGKMARDFL AIPVSTVISK SSEWQFHFKS KRQPAASLIN  780
VVVPPHHMVR DHTTNLPLTH HVRNSPYWRS TLRAIYSASV VDNATHFCNL DCHETAPPAN  840
FIKYPDVDFL ESTSPAISAS VYPSNTGLSL PKHKLKLEVP LRYLSIHFTA DQCSLPGLER  900
NRLTTPTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G026300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443930.10.0uncharacterized protein LOC7458890
STRINGPOPTR_0016s02710.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.25e-24Nin-like family protein