PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G027100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 319aa    MW: 36792.4 Da    PI: 8.1253
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G027100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS194.75.9e-6063172330
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          + LlecA+a++ g+   a++lLa+++ las++    ++++++yf+eAL +r ++         pp + ++      +   ++ +e+  ++
  Potri.016G027100.1   6 FHRLLECAKAIEGGNVDVADSLLAEIQSLASKEEsIWTRKVVKYFAEALVRRAYGIR-------PPCPLPS--LPLLFPPIHYMYEL--FY 85 
                         589***************************9999568999***************22.......3333331..22233334445665..58 PP

                GRAS  92 kfshltaNqaIleave.geervHiiDfdisqGl.QWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefn 179
                         +f+ +t  + + +a++ g++r+H+iDf+i  G+ QW +L+++L ++ +g  s+ iT ++++      + +++ ++ ++ A+++ g +fe +
  Potri.016G027100.1  86 QFAKITNKHVLADALNsGNKRLHVIDFSIVFGFpQWNSLIKELKEQYGGLQSVLITSIAPKL----SKHSAYLRQNREWARKVeGKNFELR 172
                         99**999999999997256*************88**************************44....444444444567888873579**** PP

                GRAS 180 vlvakrledl..eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          l++++ ed+   +++Lr ++ gE+++Vn+ + lh+ll++++++e+    vL+ vk+l ++++v+veqea++ns+++ er+ +++++ys +
  Potri.016G027100.1 173 QLICNSPEDIvnCISKLRRQRkGEMVVVNWYFTLHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPDLSERLEQSFQHYSPF 259
                         **99988777555899988778************************....***************************************** PP

                GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                         f+sle+       +r+++ +++++r+i nvvaceg +r+er e++++W++rl++aGF pvp +
  Potri.016G027100.1 260 FESLEED-----YHRNVLWEMYFRRQIGNVVACEGVDRVERIESFAQWQNRLSQAGFCPVPQK 317
                         ****999.....59999999***************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.2851319IPR005202Transcription factor GRAS
PfamPF035142.1E-576317IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASLLFHRLL ECAKAIEGGN VDVADSLLAE IQSLASKEES IWTRKVVKYF AEALVRRAYG  60
IRPPCPLPSL PLLFPPIHYM YELFYQFAKI TNKHVLADAL NSGNKRLHVI DFSIVFGFPQ  120
WNSLIKELKE QYGGLQSVLI TSIAPKLSKH SAYLRQNREW ARKVEGKNFE LRQLICNSPE  180
DIVNCISKLR RQRKGEMVVV NWYFTLHKLL AQDGAMEQVL SKVKDLGADI MVIVEQEANL  240
NSPDLSERLE QSFQHYSPFF ESLEEDYHRN VLWEMYFRRQ IGNVVACEGV DRVERIESFA  300
QWQNRLSQAG FCPVPQKAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-1853154327GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G027100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443928.10.0uncharacterized protein LOC18108977 isoform X1
TrEMBLA0A3N7HPP80.0A0A3N7HPP8_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2812233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-55GRAS family protein