PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G027300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 122aa    MW: 13235.3 Da    PI: 5.6928
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G027300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.12.4e-09969564
                GRAS  5 LlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal 64
                        L+ecA+ ++ g+l +a++lLa ++ las+++ +++ ++ +y +eAL +r ++  + + + +
  Potri.016G027300.1  9 LVECAKKIEGGKLDAADSLLAVIQSLASKEAsTSTWKVFKYCAEALVRRAYGIRPPCPSPF 69
                        89************************9999989****************999666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.981121IPR005202Transcription factor GRAS
PfamPF035148.1E-7969IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MAFIFSLGLV ECAKKIEGGK LDAADSLLAV IQSLASKEAS TSTWKVFKYC AEALVRRAYG  60
IRPPCPSPFV PFLYEHEYKF DPLYLFDAIT SEHAIADALN PINDSTLLTS PSCSIFRGGI  120
P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G027300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443927.14e-34uncharacterized protein LOC112324561
TrEMBLA0A2K1X9T32e-83A0A2K1X9T3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02720.11e-32(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.17e-07RGA-like protein 3