PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G028100.1

Common Name

POPTR_0016s02800g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 191aa MW: 21448.1 Da PI: 10.4565

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G028100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+ F+++ L H++ H Potri.016G028100.1 39 FKCKYCKNKFTTSQALGGHQNAH 61 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.49E-6	36	67	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.6E-4	37	65	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	6.8E-6	39	63	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.281	39	66	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSSTEQNRAA ENMNSNRSRL DLSLMDFFEG NSSGERRMFK CKYCKNKFTT SQALGGHQNA 60 HKRERAIEKR DKLLSEHMTY IPYPFWDMAI RSPMHYSSLG KNLGVDTSSM IHKPYSHWFR 120 GGFGQAGGRR YGGPSRPHIM NHQPSSSHMQ NGGLQPMPSN ILTNGNHTGG SSTSKNQKEE 180 GPRLELSLKL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G028100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322594.2	1e-123	zinc finger protein 3
TrEMBL	B9IHJ1	1e-139	B9IHJ1_POPTR; Uncharacterized protein
STRING	POPTR_0016s02800.1	1e-140	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17475	4	7
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-18	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Potri.016G028100.1
Entrez Gene	7458895