PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G035400.1
Common NamePOPTR_0016s03460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 242aa    MW: 27187 Da    PI: 8.4774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G035400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-1171117354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRR+riNs +++Lr ll  +      K +Ka+ L k+v+ +++L
  Potri.016G035400.1  71 KNHKEAEKRRRERINSHLDKLRGLLLCN-----SKTDKASLLAKVVQRVREL 117
                         58*************************8.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.36768117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.81E-1071120No hitNo description
PfamPF000107.4E-971117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1272125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1372130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-1074123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQPENCSENS QLYRFLAENG MINVGAYGFP GAAMQTLCTS SSTSYHNNNY QFESSVITDM  60
TPQDRALAAL KNHKEAEKRR RERINSHLDK LRGLLLCNSK TDKASLLAKV VQRVRELKQQ  120
TSELSGLETF PSETDEVTVL SGEYSSDGQL IFKASLCCED RLDLMPELNE ILKSLHLKTL  180
KAEMVTLGGR IRNVLIIAAD KDHSVESVHF LQNALKSLLE RSNSSEKSKR RRILDRKLVI  240
Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.131340.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G035400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1448040.0EF144804.1 Populus trichocarpa clone WS01118_H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322615.21e-178transcription factor bHLH106
SwissprotO806745e-82BH106_ARATH; Transcription factor bHLH106
TrEMBLA9P9G71e-177A9P9G7_POPTR; BHLH family protein
STRINGPOPTR_0016s03460.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-78bHLH family protein
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]