PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G037300.1
Common NamePOPTR_0016s03680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 265aa    MW: 29974.8 Da    PI: 7.2538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G037300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.5e-1471123155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn+ Er RR++iNs ++ Lr+llP a   + kKls   ++ ++  YI +Lq
  Potri.016G037300.1  71 KKLNHNASERDRRKKINSLYSSLRSLLPAA--DQRKKLSIPYTVSRVLVYIPKLQ 123
                         6789*************************6..48899**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.5670122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1570140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-471127No hitNo description
PfamPF000106.9E-1171123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-1371139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-976128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MLEELSPISL FSTFGWPLEE AISHEQLYSF RDGETPESFT HFPPSQPDVR QLDRSTSFTA  60
HSGSGDPSMA KKLNHNASER DRRKKINSLY SSLRSLLPAA DQRKKLSIPY TVSRVLVYIP  120
KLQQQVERLI QRKEELLSKL SRQADDLTHQ ENQRKGTMYS SLSSVSASRL SDREVVIHIS  180
TNKLHRSSLS EILVNLEEAG LLLLNSSSFE SFGGRVFYNL HLQAMEGTYT VECEALNERL  240
VSLCEKRESL FPLNSSSPYS NCVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G037300.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323250.20.0transcription factor ORG2 isoform X1
TrEMBLB9IHR70.0B9IHR7_POPTR; Uncharacterized protein
STRINGPOPTR_0016s03680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-50bHLH family protein