PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G046600.1
Common NamePOPTR_0016s04690g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 286aa    MW: 30015.1 Da    PI: 9.9072
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G046600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-073761226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k ++C  f+ t  C++G++C+F H 
  Potri.016G046600.1 37 KSKPCTKFFSTAGCPFGESCHFLHH 61
                        7789********************6 PP
2zf-CCCH24.35.4e-0894119227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         k +lC+ +     Ck+Gd+C+FaHg+
  Potri.016G046600.1  94 KSRLCKKYNSAEGCKFGDKCHFAHGE 119
                         679*********************96 PP
3zf-CCCH34.53.5e-11252276126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC++fa+ G C +G rC+FaHg
  Potri.016G046600.1 252 YKTKLCDNFAK-GSCTFGQRCHFAHG 276
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.373562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0093563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-63662IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-53761IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-83761IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-1390122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-891123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.82692120IPR000571Zinc finger, CCCH-type
SMARTSM003560.0194119IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-694119IPR000571Zinc finger, CCCH-type
SMARTSM003223.1E-10161231IPR004087K Homology domain
PROSITE profilePS5008413.586162226IPR004088K Homology domain, type 1
SuperFamilySSF547916.28E-13163231IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-14163231IPR004088K Homology domain, type 1
CDDcd001058.88E-13164227No hitNo description
PfamPF000134.6E-10164228IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.4E-16249282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-8250281IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-7251277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014251278IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8252276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMDTRKRGRP DFGTNGYGGF KKSKQEMDSL STGVGSKSKP CTKFFSTAGC PFGESCHFLH  60
HVPGGYKAVA QMVNLGPTVA LPPVPNSSAP SAVKSRLCKK YNSAEGCKFG DKCHFAHGEW  120
ELGKAFVPSH NDPHAAGSVP GRLGGRVEPP PPGPATSFGV FATTTRISVD ASLAGSIIGK  180
AGVHSKQICR QTGIKLSIKD HETNPNLKNI ELEGSLEQIA QASKMVEELV RVTSANAAAK  240
SSGGHANPGS NYKTKLCDNF AKGSCTFGQR CHFAHGAAEL RKSSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G046600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323285.20.0zinc finger CCCH domain-containing protein 31
SwissprotQ7F8R01e-99C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9IHZ70.0B9IHZ7_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-90C3H family protein