PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G046600.2
Common NamePOPTR_0016s04690g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 215aa    MW: 22355.3 Da    PI: 9.6259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G046600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-082348227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        k +lC+ +     Ck+Gd+C+FaHg+
  Potri.016G046600.2 23 KSRLCKKYNSAEGCKFGDKCHFAHGE 48
                        679*********************96 PP
2zf-CCCH352.3e-11181205126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC++fa+ G C +G rC+FaHg
  Potri.016G046600.2 181 YKTKLCDNFAK-GSCTFGQRCHFAHG 205
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-131951IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-82052IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8262149IPR000571Zinc finger, CCCH-type
SMARTSM003560.012348IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-62348IPR000571Zinc finger, CCCH-type
SMARTSM003223.1E-1090160IPR004087K Homology domain
PROSITE profilePS5008413.58691155IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.7E-1592160IPR004088K Homology domain, type 1
SuperFamilySSF547913.51E-1392160IPR004088K Homology domain, type 1
PfamPF000132.7E-1093157IPR004088K Homology domain, type 1
CDDcd001053.42E-1393156No hitNo description
Gene3DG3DSA:4.10.1000.103.5E-16178211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-9179210IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-7180206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014180207IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9181205IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVNLGPTVAL PPVPNSSAPS AVKSRLCKKY NSAEGCKFGD KCHFAHGEWE LGKAFVPSHN  60
DPHAAGSVPG RLGGRVEPPP PGPATSFGVF ATTTRISVDA SLAGSIIGKA GVHSKQICRQ  120
TGIKLSIKDH ETNPNLKNIE LEGSLEQIAQ ASKMVEELVR VTSANAAAKS SGGHANPGSN  180
YKTKLCDNFA KGSCTFGQRC HFAHGAAELR KSSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G046600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323285.21e-156zinc finger CCCH domain-containing protein 31
SwissprotQ69XQ38e-73C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2K1XAS01e-156A0A2K1XAS0_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04690.11e-155(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-62C3H family protein