PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G048000.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 233aa MW: 25543.2 Da PI: 6.1512

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G048000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26.3	1.6e-08	179	203	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r+rWt+ LHe+F+++v++LG + Potri.016G048000.2 179 KKRIRWTQGLHEKFIKCVNSLGCCK 203 78*******************8654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-6	177	206	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGEVSQSQDV EPATSTNIIP SQFDQLAPAF CISECLFDLQ QDDDYEFPTF PSCSQVPGPN 60 DAKMSSNQSS RGNIFDESSW QTVLRPYLFS NQHHKYCEKT QKHLSSINLG GSTSLSLERV 120 QLLGDNATLI GRPLQPTSDR QNDPELLKSQ QLESSTRHLG DGSSTSSGSG SSGPIFSSKK 180 RIRWTQGLHE KFIKCVNSLG CCKSKTKGHT EDDGNERIDH RSGQKSLAEI SI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G048000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443214.1	1e-167	myb family transcription factor PHL5 isoform X2
TrEMBL	A0A2K1XAS9	1e-170	A0A2K1XAS9_POPTR; Uncharacterized protein
STRING	POPTR_0453s00230.1	1e-130	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.016G048000.2