PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G050500.1
Common NamePOPTR_0016s05100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 352aa    MW: 38904 Da    PI: 9.5935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G050500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13279324655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Potri.016G050500.1 279 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 324
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-16276335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.53E-12277326No hitNo description
Gene3DG3DSA:4.10.280.102.1E-14278335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-13279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDSSSNNNYH QQNQPSSGLL RFRSAPSSLL ASFNDSGVDN DSVLNYQEFE DKSAARVREE  60
AVNYSNFPRS YSGLPPHYPR QGSATNSSAM DSSYGLIGSI SMGHHEQLKR VDPSLARQNS  120
SPAGLFGNVS VQNGYPGWNG TNGEANSRLK SQLSLSSRAP SSLGFRSQIS EIGSESIEAG  180
SPSADSRFHS SHGFPYGSWN NSHLSENFSS MKRDQENGNL FSNNAQNGEL GNRTHVFAHH  240
LSLPKTSVEM VAMEKFLHLQ DSVPCKIRAK RGCATHPRSI AERVRRTRIS ERMRKLQELV  300
PNMDKQTNTA DMLDLAVDYI KDLQKQYKTL SDNRANCKCL SKQKPVQNKI V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G050500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3848905e-36FQ384890.1 Vitis vinifera clone SS0AEB4YB12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323299.20.0transcription factor bHLH130
SwissprotQ66GR31e-104BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A2K1XAW90.0A0A2K1XAW9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]