PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G053700.2
Common NamePOPTR_0016s05410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 531aa    MW: 57994.7 Da    PI: 7.2705
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G053700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07106126526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Potri.016G053700.2 106 PCPDFRK-GACRRGDMCEYAHG 126
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-6101127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4106128IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5106126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4134164IPR000571Zinc finger, CCCH-type
SMARTSM0035633136159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MNSNSPPLSP SRENGSPLSG SDSPMKSKLY EAPVSFVSER KEYPVDPSLP DIKNSIYSTD  60
EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM  120
CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTVE ELRPLYVSTG SAVPSPRSGT  180
SGAAAMDFAS AMNLLPGSPS AASIMSPSSF TPPMSPSGNG MSHSSLAWPQ PNVPALLLPG  240
SNMQSSRLRS SFNARDIPAD YSFLPEFDVQ QQQLLSELSS LTQPSLSNNS LNRSGRLKAL  300
TPSNLDDYFS AESSSPRHAD QALASAVFSP THNSAFLNQF QQQQSMLSPI NTNFSPKNGD  360
HPLLQASFAS GRMSPRSVES ISPMSSRASM LAQREKQLQQ LRSLSSRELG SNAAAIVGSP  420
VNTWSKWGSS NGKPDWTVST DELGKLRRSN SFELGNGDEP DLSWVQSLVK ESPTEMKEKL  480
SMPVSGSVAA SASSSESSNV NSQIEPIDLD HVVGSWVELL QIDQLVAQQN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.156160.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G053700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323312.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9II600.0B9II60_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]