PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G054100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 128aa    MW: 14605.1 Da    PI: 9.8434
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G054100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA34.56.8e-113253658
           CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58
                        +pylheSRh hA+rR+ g+gGrF
  Potri.016G054100.1  3 QPYLHESRHLHAKRREGGCGGRF 25
                        89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115216.11128IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-7325IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MLQPYLHESR HLHAKRREGG CGGRFINKKK PDTTAASTVP DTHTSSYETV LRNVNNSSSS  60
GSRPFNFFRE SDSPRSNGEA TEPLHQTHPN QTYSSSGCNL QFPWYHISKF HWLSEKMAGE  120
RDRNVNKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G054100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308961.36e-39nuclear transcription factor Y subunit A-10
TrEMBLA0A2K1XB371e-91A0A2K1XB37_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0016s05440.12e-70(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-11nuclear factor Y, subunit A7