PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G068500.1
Common NamePOPTR_0016s06900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 468aa    MW: 52090 Da    PI: 5.2969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G068500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13260306354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h + Er+RR+++N ++  Lr l+P++      K++ a+++ +A++YIk+L
  Potri.016G068500.1 260 TKHFATERQRREHLNGKYTALRNLVPNP-----SKNDRASVVGEAIDYIKEL 306
                         68*************************9.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-13258311No hitNo description
PfamPF000101.1E-10260306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-16260323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13260315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MYVETACFEP NNSMVEDVTD DGFCHAIPLM AGNSTTNSFE EHLKLSMEEF SSHYPQEESA  60
AAASMEEIQL QHHMAFSNNN TNHHLMQQYP TQLLSYDHSS NWDPNIIQFQ EMHQVLDQNS  120
SFDATANTQS SLPPDLLNLF NLPRCTSTST LLPNSSISFT NPAHKAPLGF MGVDNTSARF  180
DPYTLAPQPH LFRELVQSLP PHGYTLPTPL FGGGQGDDHV DGQSGGGLSY QDGDHGDGVF  240
EFTDEMACIG KGIKKTGKVT KHFATERQRR EHLNGKYTAL RNLVPNPSKN DRASVVGEAI  300
DYIKELLRTV QELKLLVEKK RCGRERSKWR KTEDDGGVEV LDNSDIKVEP DQSAYSNGSL  360
RSSWLQRKSK DTEVDVRLIE DEVTIKLVQR KRVNCLLYVS KVLDELQLDL HHAAGGLIGD  420
YYSFLFNTKI NEGSCVYASA IANRLIEVVD RQYASSTTTV PAAGSCY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G068500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323376.10.0transcription factor bHLH91 isoform X1
TrEMBLB9IIJ60.0B9IIJ6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.16e-80bHLH family protein