PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G069300.1
Common NamePOPTR_0016s07000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 226aa    MW: 25219.8 Da    PI: 6.7274
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G069300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.69.9e-371468761
              zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        +cprC s+ntkfCy+nnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++ 
  Potri.016G069300.1 14 SCPRCGSSNTKFCYHNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGGCRKNRRG 68
                        7***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-26167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1641367IPR003851Zinc finger, Dof-type
PfamPF027011.1E-301467IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101551IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
METGWKEHAE ISPSCPRCGS SNTKFCYHNN YSLTQPRYFC KGCRRYWTEG GSLRNVPVGG  60
GCRKNRRGKS MRLSTDSSSS SMIPDGSHID LALVYAKFLN PQQDSKKNGL AGSLTISDFS  120
TGVPLSDNDH LMYYYSLDSA HKHQDHQDRT QQCTSHETSS FHLPPLPGQD TVSQDILWSN  180
SHMMDNHSLE MSPQPVLGPD TQDPNLLFGN WSPFDMSSDD TFSRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G069300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442880.11e-151dof zinc finger protein DOF3.5
SwissprotQ9SVC53e-58DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A3N7G2L61e-149A0A3N7G2L6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s07000.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-58Dof family protein