PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G069700.5

Common Name

POPTR_0016s07040g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 645aa MW: 70375.5 Da PI: 7.5385

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G069700.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.6e-09	378	415	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Potri.016G069700.5 378 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 415 554458******************************88 PP
2	BELL	126.2	1.3e-40	242	313	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi Potri.016G069700.5 242 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 313 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.0E-68	166	311	IPR006563	POX domain
Pfam	PF07526	6.3E-51	171	310	IPR006563	POX domain
PROSITE profile	PS50071	12.147	356	419	IPR001356	Homeobox domain
SMART	SM00389	1.4E-8	359	423	IPR001356	Homeobox domain
CDD	cd00086	2.85E-11	359	420	No hit	No description
SuperFamily	SSF46689	1.2E-16	360	426	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	362	425	IPR009057	Homeodomain-like
Pfam	PF05920	2.6E-18	376	415	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MATYFHGNPD FQAAAASAEG LQTLVLMNPT YVQYSNTPPP PPSNNFVFLN AAASAAASNS 60 LSPQPHLSGH APPNTQQFVG IPLDPNSHDA STLHGLIPRI HYNLYNPIDP PPTARDTPRA 120 QQGLSLSLSS QKQGCFGSQA QTVSGEDIRV SGGSVSSGSG VTNGVLGMQG VLLSSKYLKA 180 AQELLDEVVS VNNNDIKSEL SKRSNGIGSN TSNKVVGESL AGEGSGGGEV SGKRGPELST 240 AERQEIQMKK AKLISMLDEV EQRYRQYHHQ MQIVISSFEQ AAGIGSAKTY TALALKTISK 300 QFRCLKDAIT GQIKAANKSL GEEDCLGGKI EGSRLKFVDH HLRQQRALQQ LGMIQHNAWR 360 PQRGLPERSV SLLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM 420 VEEMYTEEIK EQEQDGSEDK TSKSDHNEDS ASRSVLQEKG NVRNQSGFSF IGSSELEGIT 480 QRSPKKRRSN DFIQSSTSVP SINMDIKPGE ANDEQVSVKF GSERQSRDGY SFMGGQTNFI 540 GGFGQYPIGE IGRFDGEQFT PRFSGNGVSL SLGLPHCENL SLSGTHQTFL PNQNIQLGRR 600 VEIGEPNEFG AINTSTPHSS TAYESIDIQN RKRFLAQLLP DFVA*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MATYFHGNPD FQAAAASAEG LQTLVLMNPT YVQYSNTPPP PPSNNFVFLN AAASAAASNS  60
LSPQPHLSGH APPNTQQFVG IPLDPNSHDA STLHGLIPRI HYNLYNPIDP PPTARDTPRA  120
QQGLSLSLSS QKQGCFGSQA QTVSGEDIRV SGGSVSSGSG VTNGVLGMQG VLLSSKYLKA  180
AQELLDEVVS VNNNDIKSEL SKRSNGIGSN TSNKVVGESL AGEGSGGGEV SGKRGPELST  240
AERQEIQMKK AKLISMLDEV EQRYRQYHHQ MQIVISSFEQ AAGIGSAKTY TALALKTISK  300
QFRCLKDAIT GQIKAANKSL GEEDCLGGKI EGSRLKFVDH HLRQQRALQQ LGMIQHNAWR  360
PQRGLPERSV SLLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM  420
VEEMYTEEIK EQEQDGSEDK TSKSDHNEDS ASRSVLQEKG NVRNQSGFSF IGSSELEGIT  480
QRSPKKRRSN DFIQSSTSVP SINMDIKPGE ANDEQVSVKF GSERQSRDGY SFMGGQTNFI  540
GGFGQYPIGE IGRFDGEQFT PRFSGNGVSL SLGLPHCENL SLSGTHQTFL PNQNIQLGRR  600
VEIGEPNEFG AINTSTPHSS TAYESIDIQN RKRFLAQLLP DFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	365	422	1	58	Homeobox protein Meis1
4xrs_B	3e-16	365	422	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.1003	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G069700.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT028867	0.0	CT028867.1 Poplar cDNA sequences.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443237.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443238.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443239.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443240.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443241.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443242.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443243.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	B9IIL1	0.0	B9IIL1_POPTR; Uncharacterized protein
STRING	POPTR_0016s07040.3	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-173	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Potri.016G069700.5
Entrez Gene	7488090

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]