PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G076000.1
Common NamePOPTR_0016s07680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 259aa    MW: 29589 Da    PI: 6.1721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G076000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.81.1e-4131372127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                         +pGfrF Pt+eelv++yL++k+e+++   l++ +  i+ +diy ++Pw+Lp+     ++++ +e++fF++r+k++a+g r++r t++gyWk
  Potri.016G076000.1   3 MPGFRFYPTEEELVSFYLRNKLEARRedlLRVMDRlIPVLDIYGFNPWELPQfsgdLCHGDPEECFFFIPRQKSEAHGGRPKRLTATGYWK 93 
                         59**********************9977744434449999***********65675444567799************************** PP

                 NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         atg+  +v+s+ +++ +g k+t+vfy+grap+g+ktdW m+ey+
  Potri.016G076000.1  94 ATGSPGSVYSSkSNRCIGEKRTMVFYNGRAPNGQKTDWKMNEYK 137
                         *********9855666***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.2072166IPR003441NAC domain
PfamPF023652.2E-214137IPR003441NAC domain
SuperFamilySSF1019414.45E-454166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDMPGFRFYP TEEELVSFYL RNKLEARRED LLRVMDRLIP VLDIYGFNPW ELPQFSGDLC  60
HGDPEECFFF IPRQKSEAHG GRPKRLTATG YWKATGSPGS VYSSKSNRCI GEKRTMVFYN  120
GRAPNGQKTD WKMNEYKAIK EEEASSSSGA YPKLREEFSL CRVYKKSNFV RAFDRRPLGV  180
ENMVQMRAQT APDDGATAFH QSPSAGEITC SHDSSTSGHH GQPFQTGEIS DMAIDNEPIW  240
EWEQLDQYWS KQGHSDQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-31416819167NO APICAL MERISTEM PROTEIN
1ut4_B3e-31416819167NO APICAL MERISTEM PROTEIN
1ut7_A3e-31416819167NO APICAL MERISTEM PROTEIN
1ut7_B3e-31416819167NO APICAL MERISTEM PROTEIN
3swm_A3e-31416822170NAC domain-containing protein 19
3swm_B3e-31416822170NAC domain-containing protein 19
3swm_C3e-31416822170NAC domain-containing protein 19
3swm_D3e-31416822170NAC domain-containing protein 19
3swp_A3e-31416822170NAC domain-containing protein 19
3swp_B3e-31416822170NAC domain-containing protein 19
3swp_C3e-31416822170NAC domain-containing protein 19
3swp_D3e-31416822170NAC domain-containing protein 19
4dul_A3e-31416819167NAC domain-containing protein 19
4dul_B3e-31416819167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G076000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166723e-70AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442908.10.0NAC domain-containing protein 90
SwissprotQ9FMR38e-75NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2K1XCD10.0A0A2K1XCD1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s07680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-75NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]