PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G076000.2

Common Name

POPTR_0016s07680g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 256aa MW: 29325.7 Da PI: 6.4025

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G076000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.3	4.2e-42	3	134	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +pGfrF Pt+eelv++yL++k+e+++ l++ + i+ +diy ++Pw+Lp ++++ +e++fF++r+k++a+g r++r t++gyWkatg Potri.016G076000.2 3 MPGFRFYPTEEELVSFYLRNKLEARRedlLRVMDRlIPVLDIYGFNPWELPrDLCHGDPEECFFFIPRQKSEAHGGRPKRLTATGYWKATG 93 59********************9977744434449999*******44555677799************************* PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + +v+s+ +++ +g k+t+vfy+grap+g+ktdW m+ey+ Potri.016G076000.2 94 SPGSVYSSkSNRCIGEKRTMVFYNGRAPNGQKTDWKMNEYK 134 **9855666*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.279	2	163	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-45	4	163	IPR003441	NAC domain
Pfam	PF02365	1.8E-21	4	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDMPGFRFYP TEEELVSFYL RNKLEARRED LLRVMDRLIP VLDIYGFNPW ELPRDLCHGD 60 PEECFFFIPR QKSEAHGGRP KRLTATGYWK ATGSPGSVYS SKSNRCIGEK RTMVFYNGRA 120 PNGQKTDWKM NEYKAIKEEE ASSSSGAYPK LREEFSLCRV YKKSNFVRAF DRRPLGVENM 180 VQMRAQTAPD DGATAFHQSP SAGEITCSHD SSTSGHHGQP FQTGEISDMA IDNEPIWEWE 240 QLDQYWSKQG HSDQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-33	4	165	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-33	4	165	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-33	4	165	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-33	4	165	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-33	4	165	22	170	NAC domain-containing protein 19
3swm_B	3e-33	4	165	22	170	NAC domain-containing protein 19
3swm_C	3e-33	4	165	22	170	NAC domain-containing protein 19
3swm_D	3e-33	4	165	22	170	NAC domain-containing protein 19
3swp_A	3e-33	4	165	22	170	NAC domain-containing protein 19
3swp_B	3e-33	4	165	22	170	NAC domain-containing protein 19
3swp_C	3e-33	4	165	22	170	NAC domain-containing protein 19
3swp_D	3e-33	4	165	22	170	NAC domain-containing protein 19
4dul_A	3e-33	4	165	19	167	NAC domain-containing protein 19
4dul_B	3e-33	4	165	19	167	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G076000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216672	5e-66	AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024442908.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-71	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2K1XCD1	0.0	A0A2K1XCD1_POPTR; Uncharacterized protein
STRING	POPTR_0016s07680.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-72	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Potri.016G076000.2
Entrez Gene	7465255

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]