PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G076100.1

Common Name

POPTR_0016s07690g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 255aa MW: 28696.8 Da PI: 6.4037

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G076100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.6	7.6e-43	4	137	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 ppG+rF Pt+eel+++yL++k++g + ++++i+ diy+++PwdLp+ ++ ++ ++w+fF++r++++a+g r++r t++gyW Potri.016G076100.1 4 PPGYRFFPTEEELISFYLHHKLDGGSedlnQVINQIIPVRDIYEHDPWDLPQfsgglHHIKDPEQWFFFIPRQESEARGGRPKRLTNTGYW 94 9*********************9955533333457777*******6577753334567*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 katg+ +v+s +++ +glk+t+vfy+grap+g+kt+W m+ey+ Potri.016G076100.1 95 KATGSPGSVFS-NNRSIGLKRTMVFYSGRAPNGRKTEWKMNEYK 137 *******.9999*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-46	2	165	IPR003441	NAC domain
PROSITE profile	PS51005	47.198	3	166	IPR003441	NAC domain
Pfam	PF02365	7.8E-22	4	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVFPPGYRFF PTEEELISFY LHHKLDGGSE DLNQVINQII PVRDIYEHDP WDLPQFSGGL 60 HHIKDPEQWF FFIPRQESEA RGGRPKRLTN TGYWKATGSP GSVFSNNRSI GLKRTMVFYS 120 GRAPNGRKTE WKMNEYKAID QGKASSSTSA NPKLRHEYSL CRVYKNSKSM RAFDRRPVGL 180 EVIEPRTQPA SGGNELVASD QNHPTVENTS SPDSSWSADQ GNPSGTGESS SMPMPIDNAM 240 WDVDLDWYYG AGQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-35	1	169	18	171	NAC domain-containing protein 19
3swm_B	2e-35	1	169	18	171	NAC domain-containing protein 19
3swm_C	2e-35	1	169	18	171	NAC domain-containing protein 19
3swm_D	2e-35	1	169	18	171	NAC domain-containing protein 19
3swp_A	2e-35	1	169	18	171	NAC domain-containing protein 19
3swp_B	2e-35	1	169	18	171	NAC domain-containing protein 19
3swp_C	2e-35	1	169	18	171	NAC domain-containing protein 19
3swp_D	2e-35	1	169	18	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G076100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002323414.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-68	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	B9IIS2	0.0	B9IIS2_POPTR; Uncharacterized protein
STRING	POPTR_0016s07690.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-70	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Potri.016G076100.1
Entrez Gene	7470254

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]