PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G085000.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 125aa    MW: 13869.8 Da    PI: 9.7637
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G085000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB76.34.6e-2425714995
               NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                         +sdkcqrekrktingddllwa+atlGfedy++plk+yl++yre ++
  Potri.016G085000.4 25 ATSDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREGDT 71
                        579****************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.07E-17687IPR009072Histone-fold
PfamPF008081.2E-42247IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.2E-202282IPR009072Histone-fold
PRINTSPR006152.2E-103048No hitNo description
PRINTSPR006152.2E-104967No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MERLLRMLKR LFKNVFLSSL ALSLATSDKC QREKRKTING DDLLWAMATL GFEDYIDPLK  60
IYLSRYREGD TKGSAKTGDT SAKKDIHPGP NAQISHQGSF SQGVSYGNSN SQAPHMMVPM  120
QSNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-1726685092Transcription factor HapC (Eurofung)
4g92_B9e-1726685092Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G085000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322853.15e-68nuclear transcription factor Y subunit B-10 isoform X2
SwissprotQ67XJ25e-40NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLB9IIZ51e-66B9IIZ5_POPTR; Uncharacterized protein
STRINGXP_006480596.15e-54(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-41nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]