PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G087400.1
Common NamePOPTR_0016s08890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family S1Fa-like
Protein Properties Length: 90aa    MW: 9780.57 Da    PI: 10.3963
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G087400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA134.82e-422489570
                S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                         +e kGlnPGlivllv+ggll+ flvgn++ly+yaqk+lPP+kkkPvskkk+k+e+lkqGv++PGe
  Potri.016G087400.1 24 DAEPKGLNPGLIVLLVIGGLLMSFLVGNFVLYTYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 89
                        6799*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190133.0E-72289No hitNo description
PfamPF046892.4E-392589IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MADDFEFSDQ SPPSFQNMGN VIKDAEPKGL NPGLIVLLVI GGLLMSFLVG NFVLYTYAQK  60
TLPPKKKKPV SKKKMKKERL KQGVSAPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.28727e-88bud| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G087400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1445831e-149EF144583.1 Populus trichocarpa clone WS01111_F03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323459.19e-58DNA-binding protein S1FA
SwissprotQ7XLX62e-15S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA9P8W52e-56A9P8W5_POPTR; S1Fa-like family protein
STRINGPOPTR_0016s08890.14e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Representative plantOGRP50951322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.11e-07S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]