PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G088300.1
Common NamePOPTR_0016s08970g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 314aa    MW: 35538.2 Da    PI: 8.7456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G088300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.87.3e-39111231128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhP+deel+v+ Lk+k+++++l++ ++i+e+d+yk++Pw+Lp               r  ky++g r+nra++sgyWkatg+dk+
  Potri.016G088300.1  11 LPPGFRFHPSDEELIVHNLKNKITSNPLPA-SIIAEIDLYKYNPWELP---------------RIGKYPNGARPNRAAASGYWKATGTDKS 85 
                         79****************************.89**************9...............4568************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ +++++g+kk Lvfykgr pkg+kt W+mheyrl
  Potri.016G088300.1  86 IINScGTTKIGVKKALVFYKGRPPKGVKTGWIMHEYRL 123
                         **9978889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-508149IPR003441NAC domain
PROSITE profilePS5100545.84711149IPR003441NAC domain
PfamPF023653.5E-2112123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEAKASSDIQ LPPGFRFHPS DEELIVHNLK NKITSNPLPA SIIAEIDLYK YNPWELPRIG  60
KYPNGARPNR AAASGYWKAT GTDKSIINSC GTTKIGVKKA LVFYKGRPPK GVKTGWIMHE  120
YRLLDAWNNS KRKGSMRLDD WVLCQVRQKN SIPRSTWEDQ NVPSSAPTGF FPGVNDLLDT  180
NINPNIEMIR NYFYNDCPML PYIFSSQDFP STERVSSINF PSTDKSSTSL GNLLNSLKRK  240
HVERDQQREN CFPRSKKLRT KADMEEEGVL SIRNDGTDEN LCGMPGQSES GCFSPVQWNP  300
LVQYQEFNHL TLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-51215111170NAC domain-containing protein 19
3swm_B1e-51215111170NAC domain-containing protein 19
3swm_C1e-51215111170NAC domain-containing protein 19
3swm_D1e-51215111170NAC domain-containing protein 19
3swp_A1e-51215111170NAC domain-containing protein 19
3swp_B1e-51215111170NAC domain-containing protein 19
3swp_C1e-51215111170NAC domain-containing protein 19
3swp_D1e-51215111170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G088300.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443774.10.0NAC domain-containing protein 83
TrEMBLA0A3N7G5A90.0A0A3N7G5A9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-65NAC domain containing protein 25