PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G093200.2
Common NamePOPTR_0016s09640g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 356aa    MW: 38755.2 Da    PI: 6.7485
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G093200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.9e-27101183271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  Potri.016G093200.2 101 SGRGLRQFSMK---VCEKVESkGTTTYNEVADELVAEfadpsnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 183
                         689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.4E-1351355IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.1E-4597189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.8E-35100183IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-25102183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-21103184IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.98E-43188291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-43190306No hitNo description
SMARTSM011382.6E-78190353IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-41191304IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVTGGGHLED GDRHPSSAAT RGGGGGATTG SWVSGQSVST SGSVGSPSSR SEHAMATPAS  60
DNTFLRLNHL DIHADDAATQ DAAANKKKKR GQRAAGGADK SGRGLRQFSM KVCEKVESKG  120
TTTYNEVADE LVAEFADPSN SVSTPDQQQY DEKNIRRRVY DALNVLMALD IISKDKKEIQ  180
WKGLPRTSLS DIEELKAERL GLRNRIEKKA AYLQELEEQF MGLQNLIQRN EQLYSSGNAP  240
SGGVSLPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFCERHQSD  300
NMAAPNPAAD GGEGSSMSIM YQPQIRTSPR TNNPVRLPTS PPLPGIIKAR VKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3899188693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G093200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1819980.0AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds.
GenBankAY3073730.0AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322893.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-157DPB_ARATH; Transcription factor-like protein DPB
TrEMBLB9IFR20.0B9IFR2_POPTR; Uncharacterized protein
STRINGcassava4.1_010769m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-129Transcription factor DP