PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.016G094800.1

Common Name

POPTR_0016s11350g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 201aa MW: 21554.2 Da PI: 9.7685

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G094800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.5	4.2e-33	50	121	5	74
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 +++++++hTkv gR+RRvR++a++aar+F+L++eLG+ +d++tieWLl+ a+++i++ tgt+++++ + Potri.016G094800.1 50 TSQSKDRHTKVHGRGRRVRMPALTAARIFQLTRELGHRSDGETIEWLLRHAEASIIASTGTGTIPSIPIstT 121 5689*********************************************************88888443211 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-28	52	129	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.561	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MASETVLYNF SSTSNSQHQQ PSPNNNNSVV PSPTTGGSQS KLTHPRKSTT SQSKDRHTKV 60 HGRGRRVRMP ALTAARIFQL TRELGHRSDG ETIEWLLRHA EASIIASTGT GTIPSIPIST 120 TVGSTPISSS SPSPSASCKV HPVNCIGPEM FSLLTAPSSR LDLDYRHMPF TALLLQPMAA 180 TVAVDAEEGR QQELTGEHKM *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269\|PubMed:9338963}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G094800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209228	0.0	AC209228.1 Populus trichocarpa clone POP075-L19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373942.1	1e-146	transcription factor PCF1
Swissprot	O23875	2e-34	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	B9N7J5	1e-144	B9N7J5_POPTR; Uncharacterized protein
STRING	POPTR_0016s11350.1	1e-145	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-29	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.016G094800.1
Entrez Gene	18106274