PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G101300.1
Common NamePOPTR_0016s10480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 162aa    MW: 17626.3 Da    PI: 5.2909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G101300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-053052123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Potri.016G101300.1 30 YTCSFCKRGFTNAQALGGHMNIH 52
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.72E-72856No hitNo description
Gene3DG3DSA:3.30.160.609.8E-52854IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00713052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3653057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDISLTTTGK SDQKACSSDD LQGSSHVRSY TCSFCKRGFT NAQALGGHMN IHRRDRAKLK  60
QALDENFLSL NITKSTEETS SAPETPCAPS IEDDCATPRN KASEEFQQLP FIVDAKVGTD  120
GSEENKMEFN QATSQAGLDL ELRLGSEPHE SSTRSSTRKF S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G101300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323519.11e-117transcriptional regulator TAC1
TrEMBLB9IFX21e-115B9IFX2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s10480.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-28C2H2 family protein