PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G117000.1
Common NamePOPTR_0016s12430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 251aa    MW: 28839.5 Da    PI: 7.7646
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G117000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.72e-311165155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k rlrWt+eLH+rF eav+qLGG+++AtPk il++m+++gLt++hvkSHLQkYR+
  Potri.016G117000.1 11 KDRLRWTQELHDRFEEAVNQLGGPDRATPKGILRAMGIPGLTIYHVKSHLQKYRI 65
                        68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.376868IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-30866IPR009057Homeodomain-like
SuperFamilySSF466894.84E-181065IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-241166IPR006447Myb domain, plants
PfamPF002494.6E-101364IPR001005SANT/Myb domain
PfamPF143793.6E-1796140IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRSRSDRSN KDRLRWTQEL HDRFEEAVNQ LGGPDRATPK GILRAMGIPG LTIYHVKSHL  60
QKYRISKFIP ETNRGKFERR NISEMLPNFS ATSGAQLNEA LLMQMEVHRR LSDQLVVQKS  120
LKLKIEAQGR FLERIVEENQ NGNPKHTKSF SPVSLPSLCD SESNAKEFET DSEGEKVEIQ  180
SEEDFQALKR LRTEHHVLPS RYQLEPLNPD PYNQNMVLQR DAKFSHPSHD VNFPWDILAT  240
CSSPLEPSFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-221168259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-221168259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-221168158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-221168158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-221168158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-221168158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-221168259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-221168259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-221168259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-221168259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-221168259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-221168259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G117000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322984.20.0myb family transcription factor PHL7
TrEMBLB9IGA10.0B9IGA1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s12430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106592535
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-54G2-like family protein