PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G119000.1
Common NamePOPTR_0016s12650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19993.5 Da    PI: 9.1701
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G119000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.25e-242874147
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        k++e +snr+vtfskR+ng++KKA ELS+LC+ae+avi+fs++ kl+
  Potri.016G119000.1 28 KKVEKESNRYVTFSKRKNGLFKKATELSTLCGAEIAVIVFSEHRKLF 74
                        57899*************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.8052080IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-312079IPR002100Transcription factor, MADS-box
CDDcd002657.62E-362189No hitNo description
SuperFamilySSF554557.98E-282192IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-212242IPR002100Transcription factor, MADS-box
PfamPF003195.1E-242975IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-214257IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-215778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDATDSNQQL QQQETRRTSK GRQKIEIKKV EKESNRYVTF SKRKNGLFKK ATELSTLCGA  60
EIAVIVFSEH RKLFSCGQPD VDKVLDRYLA ETERVPNSFP AVTNNSIESQ LANKQQYARS  120
LKRLEDEQTV AKMIGNMNDM NEGGFWWDLL GNFQNSNTHN LRGSATCLLH GATGLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A4e-192190170Myocyte-specific enhancer factor 2A
3mu6_B4e-192190170Myocyte-specific enhancer factor 2A
3mu6_C4e-192190170Myocyte-specific enhancer factor 2A
3mu6_D4e-192190170Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G119000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091032e-39AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
GenBankAC2134202e-39AC213420.1 Populus trichocarpa clone POP033-D24, complete sequence.
GenBankAC2146322e-39AC214632.1 Populus trichocarpa clone POP076-H19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323594.21e-98agamous-like MADS-box protein AGL62
RefseqXP_024443414.11e-98agamous-like MADS-box protein AGL62
RefseqXP_024443416.11e-98agamous-like MADS-box protein AGL62
TrEMBLU5FPB21e-130U5FPB2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s12650.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29AGAMOUS-like 62