PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G120800.1
Common NamePOPTR_0016s12830g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 164aa    MW: 18127.4 Da    PI: 7.6531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G120800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-104686954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r RR+ri ++f  L++l+P       +K++ +++Le+A++Y+k L
  Potri.016G120800.1 46 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAINYVKFL 86
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7453786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-144296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-144390No hitNo description
SMARTSM003533.8E-134392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-124390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-84686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDYYSTTNPS SSGSSSAPKN GKEKKKGGRK SSGGVKLSTD PQSVAARERR HRISDRFKIL  60
QSLVPGGTKM DTVSMLEEAI NYVKFLKTQV LLHQTIMNFV DDERSLDHYL PADYSTALPT  120
EQPSYLDGNF APVVHPSISV LPCPDSYLLG ENYMQYDAFD IKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G120800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374002.11e-119transcription factor LAX PANICLE 1
TrEMBLB9NI621e-117B9NI62_POPTR; Uncharacterized protein
STRINGPOPTR_0016s12830.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Representative plantOGRP89411014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-29APRATAXIN-like