PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G121700.1
Common NamePOPTR_0016s12930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 176aa    MW: 20373.4 Da    PI: 10.1392
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G121700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-0974108337
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvke 37 
                         ++kr +r + NR++A+rsR+RK+ ++e+Le+ vk+
  Potri.016G121700.1  74 KSKRIKRIMANRLSAQRSRLRKLVYVEKLERDVKA 108
                         68*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.6E-56889No hitNo description
SMARTSM003382.8E-472136IPR004827Basic-leucine zipper domain
PfamPF001703.3E-874108IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.91E-976130No hitNo description
CDDcd147037.43E-1477128No hitNo description
PROSITE patternPS0003607994IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-690139No hitNo description
Gene3DG3DSA:1.20.5.1709.6E-5140167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MLNPKRSHSA SYFDMEANSR PRVPLLLGSA RDSFAFLKEP CFVKSGTGSC TVAEQQNDTQ  60
GKRRHDNALD SELKSKRIKR IMANRLSAQR SRLRKLVYVE KLERDVKAEE VKVYWLSLQE  120
SLYQQSQMAL QTENTHIKEI MEGLEREKAM KEVEFQYLKK ELQALRGASM RLLYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G121700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165446e-74AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9IGE51e-126B9IGE5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s12930.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2822033
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-14bZIP family protein