 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.016G122500.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 536aa MW: 60137 Da PI: 4.5461 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.016G122500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 131.3 | 1e-40 | 164 | 534 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
+lL + ea++ g+ ela+ ++ +se +sp+g++++ la+ + + L+++ k + + aa+++f++++P+ +f
Potri.016G122500.1 164 HLLKAYGEAMDGGQSELADVIMRCVSEKVSPAGEALECLAFNLCQDLEKQGDY-----IKRES--------CRNFEAAFRAFYQIFPYGRF 241
7888889999*******************************999999987665.....22222........445668999*********** PP
GRAS 94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfef 178
+h++aN+aIlea+ + e++Hi+Dfd+++G+QWp+L++aLa ++ +R+T+++ ++ + + + ++rL + A+ +g++++
Potri.016G122500.1 242 AHFAANSAILEAIPADaETIHIVDFDLGEGIQWPPLIEALAHQQ---KAVRLTAIKWKKDDcnwapMVWSFDAAKRRLLDHARYFGLNLKV 329
*************88879***********************975...56********888899988888999******************* PP
GRAS 179 nvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqe..adh.nses 252
+ + +edl ee + ++ +E l+ n++l+l ++ ++ +++ +++L++ k l ++ ++++ + + ++ ns++
Potri.016G122500.1 330 EEM---GIEDLASEEKKANKrgvgKEWLVFNSMLRLPHMG--RARSRQLVEQFLRVAKALLANsafcnsssrgIITFGDGDscENLkNSSD 415
997...667776666666666778***************8..4555555789999999996544444444455999999996334589*** PP
GRAS 253 Flerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
F f + +y al+ds+e+k+p + e+r+ +E ++++ i++ ++ ++ e +++ + G++ ++s + ++a+ ++
Potri.016G122500.1 416 FGSFFEGHMAHYKALLDSIESKFPVHLtEARMALECLFVAPYISSQ-----DWYQKWVE-MKQGCNLELGNGLEGWRVSRVNLEEAREMVG 500
***********************98876999999999888888653.....33233334.55555555568******************** PP
GRAS 343 kvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
+ s g ++ + ++++l Wk+ pLv vS Wr
Potri.016G122500.1 501 GKQsSYGVKIGgDLGKEMILEWKSTPLVRVSTWR 534
9996777777755588899**************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MMQPEVFQPS WPFYRVISSA NLDQLGFYGT DMDAYVDACQ FSSSFANNED IYDISSMFPT 60
VFNGDQSVQS PASSDDFQVQ VPCVEDFLMK GFEPNLIKEM ELIFCESEGN SSSQELSSEG 120
ENVWSPSPSI KSSEASMDTT PIPQSTLELP GEELQLENQV SLFHLLKAYG EAMDGGQSEL 180
ADVIMRCVSE KVSPAGEALE CLAFNLCQDL EKQGDYIKRE SCRNFEAAFR AFYQIFPYGR 240
FAHFAANSAI LEAIPADAET IHIVDFDLGE GIQWPPLIEA LAHQQKAVRL TAIKWKKDDC 300
NWAPMVWSFD AAKRRLLDHA RYFGLNLKVE EMGIEDLASE EKKANKRGVG KEWLVFNSML 360
RLPHMGRARS RQLVEQFLRV AKALLANSAF CNSSSRGIIT FGDGDSCENL KNSSDFGSFF 420
EGHMAHYKAL LDSIESKFPV HLTEARMALE CLFVAPYISS QDWYQKWVEM KQGCNLELGN 480
GLEGWRVSRV NLEEAREMVG GKQSSYGVKI GGDLGKEMIL EWKSTPLVRV STWRN*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216544 | 0.0 | AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence. |
