PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G012900.1
Common NamePOPTR_0017s04460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 111aa    MW: 12592.6 Da    PI: 9.9532
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G012900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP29.91.5e-0973103131
                         --SSTT-----TT--HHHHHTT--HHHHT-S CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskap 31 
                         +Cq+e+C +dl+ ak+yh++hkv e h+k +
  Potri.017G012900.1  73 CCQIENCIVDLTYAKQYHNKHKVFEYHTKGS 103
                         6***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-967101IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.20371110IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-872103IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEGKLKQIRM VMGRVVIKKE SVNESSNDEG YKQNKVEFIK DEFFKRNRKK IMVVTSGCGS  60
GRKVSDGGGG MKCCQIENCI VDLTYAKQYH NKHKVFEYHT KGSGYACNWK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G012900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2106560.0AC210656.1 Populus trichocarpa clone POP061-K03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309744.22e-17squamosa promoter-binding protein 1
RefseqXP_011047666.16e-17PREDICTED: squamosa promoter-binding protein 2-like isoform X1
RefseqXP_011047667.12e-17PREDICTED: squamosa promoter-binding protein 2-like isoform X2
TrEMBLA0A2K1X1R42e-74A0A2K1X1R4_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04460.12e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-08squamosa promoter binding protein-like 8