PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G018600.1
Common NamePOPTR_0017s04990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 748aa    MW: 85502.2 Da    PI: 5.1967
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G018600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS205.23.7e-6383594374
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                          Ll+cA+a++ gdl+la++l++ + +      d+  +l++y +eAL +r+++    ly   +p++  ++ ++ +    ++ ++ +P++ fs
  Potri.017G018600.1   8 KLLDCAKAIEVGDLHLADSLIKDILT------DNDDKLVKYCAEALVRRVYK----LY-PRNPRPLVPSCTDLRC---NMDYQFFPFFWFS 84 
                         79*******************99864......67789***************....44.2333333332233333...345899******* PP

                GRAS  95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                          lt+ ++I++a+ g++rv +iDf+++ +G  W  Ll+   ++++++ s+ +T +g+  s++ + l+e+ e+L k A++l ++fe + +va+
  Potri.017G018600.1  85 ELTTRNTIVDALTGKKRVQVIDFSLMaNGRRWCLLLDDYLKQSSDAISFHLTSIGPILSKKGDYLNEILEKLPKEAKKLPIEFEVKHMVAS 175
                         ************************863799**************************9999***************************9999 PP

                GRAS 185 rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl. 271
                         + +++   +L++++   +E+++V + ++lh+ll+ ++++e     vL+ +k+l+P++++vveqea++n+++Fle f+++++y+s +fdsl 
  Potri.017G018600.1 176 SPAEMVEAALKLERsseDETIVVRWEFELHKLLALPGAIET----VLSKLKELKPEIMIVVEQEASLNGQDFLECFTKSFRYHSIIFDSLg 262
                         87777788888887778****************88888887....*********************************************6 PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         + ++ +  ++ +++ +++++r+i+n+va+eg++++ rh+t+++Wr+r+ ++GF+ v+l+++   +      + +  +y++ee +   vl+ 
  Potri.017G018600.1 263 KDNFEHG-NHSKVLWEMYFRRQISNLVAQEGTDQIVRHQTFAEWRDRFCRSGFRHVRLQNQFKGTF---FGHLP--EYHIEEMNRHPVLYR 347
                         6676554.5556666677****************************************98765543...33333..599************ PP

                GRAS 363 kdrpLvsvSaWr 374
                         +d +L+++SaW+
  Potri.017G018600.1 348 HDDQLLFTSAWK 359
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.711344IPR005202Transcription factor GRAS
PfamPF035141.3E-608359IPR005202Transcription factor GRAS
PROSITE profilePS5080812.504696747IPR003656Zinc finger, BED-type
SMARTSM006141.4E-16696746IPR003656Zinc finger, BED-type
SuperFamilySSF576672.38E-7699744No hitNo description
PfamPF028921.7E-8699743IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MATPGFNKLL DCAKAIEVGD LHLADSLIKD ILTDNDDKLV KYCAEALVRR VYKLYPRNPR  60
PLVPSCTDLR CNMDYQFFPF FWFSELTTRN TIVDALTGKK RVQVIDFSLM ANGRRWCLLL  120
DDYLKQSSDA ISFHLTSIGP ILSKKGDYLN EILEKLPKEA KKLPIEFEVK HMVASSPAEM  180
VEAALKLERS SEDETIVVRW EFELHKLLAL PGAIETVLSK LKELKPEIMI VVEQEASLNG  240
QDFLECFTKS FRYHSIIFDS LGKDNFEHGN HSKVLWEMYF RRQISNLVAQ EGTDQIVRHQ  300
TFAEWRDRFC RSGFRHVRLQ NQFKGTFFGH LPEYHIEEMN RHPVLYRHDD QLLFTSAWKS  360
YPTQLNSESL DNWNQESAMG DGNIMQIESS SLLILSGTVS SSAFLEDQPD DEHIIMEGKV  420
WSPECISINQ VAASAKIFDM LEYICHVNYL PLALTWMSDR RILRLEKSAC YLNDSTMVEF  480
MEACGEHHLE EGKGVAGKAL QSNSMYFVSD ISKLDVKDYP FIFEAWDFGL RGVVAIKLES  540
VYVSSIDYVV EFFLPLEMKG ISGQRLLINE ITNILQKNSR NSWKVCTQEL NGFNISSEVE  600
VTMEEVGTSN IRPAAISDSP PLALSEIGSL NSSQIRELCN IFMPTGDGVE VPEAHDQEFE  660
EQNSVFGPQA YQFPDSDELV GMDSSHINTS RTSKRRRTSE VWQYFDEVRE DGEVWAKCRS  720
CSTKYRGEST RGTTNLRKHL RSCPGKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-181235826378Protein SCARECROW
5b3h_A4e-181235825377Protein SCARECROW
5b3h_D4e-181235825377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G018600.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444666.10.0uncharacterized protein LOC112324718
TrEMBLA0A2K1X2190.0A0A2K1X219_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1586236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-62GRAS family protein