PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G021400.1
Common NamePOPTR_0017s05010g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 388aa    MW: 45364.3 Da    PI: 7.3774
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G021400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS219.61.5e-6763662374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          e L+ecA+a+++gdl+ a++l +++   +s ++  +++++++yf+eAL +rl++    ly   p+       +  +  ++ l  +  P+l
  Potri.017G021400.1   6 LEKLMECAKAIEDGDLKHADSLFKEIGLESSTEAnLATRKVVKYFAEALVRRLYK----LYPRNPMPL-----VRFREDMDILGCKFEPFL 87 
                         578**************************9999856*******************....553333333.....333334444557889*** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisq.GlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          f+  t     ++a+ g+++vHiiDf++     Q ++L++ Las  ++  s RiT vg++ s++   l+ +   L+k Ae+ +++fe+   
  Potri.017G021400.1  88 SFASYTIMPPFYDALRGKKQVHIIDFSVAVdIWQHATLMKVLASELGSRLSYRITFVGPKLSKHLGYLKLISLILTKTAENHQIDFEYGEY 178
                         ***************************975167**************************9999*************************999 PP

                GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                         +a++++++   +L++ +   +Ea++V + ++lh+ll+ + +  +    v++ +k+l+P+v+v+veqeadhns+++++r+ ++++yys++fd
  Potri.017G021400.1 179 LANSVDEIVGATLQLGRrnkEEAVVVEWEFELHKLLAVPSDKFN---LVMSRLKDLKPEVMVIVEQEADHNSPDLMDRLGKSFKYYSVMFD 266
                         999*****9999988776789***************66665555...******************************************** PP

                GRAS 270 sl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                         sl e k+ + ++ r+  Er  ++r+i++vva eg   +erhet ++Wr+rl +aGF+p+++    +    +l ++   + yr+ee++   +
  Potri.017G021400.1 267 SLeEDKFEKLEDYRVLWERN-FRRQISKVVAEEGIGYVERHETWAQWRARLFRAGFHPARI----MFRETMLFNNKT-NQYRIEEKNRRPL 351
                         **999999999999999999.*************************************986....555566776666.56*********** PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l+  d p    SaW+
  Potri.017G021400.1 352 LCRLDYPFAISSAWK 366
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.251351IPR005202Transcription factor GRAS
PfamPF035145.3E-656366IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAPPLLEKLM ECAKAIEDGD LKHADSLFKE IGLESSTEAN LATRKVVKYF AEALVRRLYK  60
LYPRNPMPLV RFREDMDILG CKFEPFLSFA SYTIMPPFYD ALRGKKQVHI IDFSVAVDIW  120
QHATLMKVLA SELGSRLSYR ITFVGPKLSK HLGYLKLISL ILTKTAENHQ IDFEYGEYLA  180
NSVDEIVGAT LQLGRRNKEE AVVVEWEFEL HKLLAVPSDK FNLVMSRLKD LKPEVMVIVE  240
QEADHNSPDL MDRLGKSFKY YSVMFDSLEE DKFEKLEDYR VLWERNFRRQ ISKVVAEEGI  300
GYVERHETWA QWRARLFRAG FHPARIMFRE TMLFNNKTNQ YRIEEKNRRP LLCRLDYPFA  360
ISSAWKPDLT HDGEHTASYN YIYQSLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-191136724379Protein SCARECROW
5b3h_D2e-191136724379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G021400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445051.10.0uncharacterized protein LOC112324780
TrEMBLU5FI080.0U5FI08_POPTR; Uncharacterized protein
STRINGPOPTR_0017s05010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2062935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-66GRAS family protein