PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G029100.2

Common Name

POPTR_0017s05780g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 206aa MW: 23545.9 Da PI: 9.8862

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G029100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.3	3.1e-29	41	128	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkwevtk+++eH+H+l+p Potri.017G029100.2 41 FYNAYATRIGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKASSGKWEVTKFVKEHTHSLTP 128 ****************************************9988..9************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-26	41	128	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDKESLAIDM IPDAVPAMSM VAADEPYMGQ EFDSEASAHA FYNAYATRIG FVIRVSKLSR 60 SRRDGSAIGR ALVCNKEGFR MPDKREKIVR QRAETRVGCR AMILVRKASS GKWEVTKFVK 120 EHTHSLTPGK ARRDCIYDQY PNEHDKIREL SQQLALEKKR AATYKRHLEL IFEQIEEHNE 180 SLSKKIQHIV HSVRGMENKP QQSQT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G029100.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	0.0	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372863.2	1e-153	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_024448818.1	1e-153	protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1
Refseq	XP_024448819.1	1e-153	protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2
Swissprot	Q9SZL8	1e-25	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1R5Z1	1e-151	A0A2K1R5Z1_POPTR; Uncharacterized protein
TrEMBL	A0A2K1X2E7	1e-152	A0A2K1X2E7_POPTR; Uncharacterized protein
STRING	POPTR_0017s05780.1	1e-152	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-113	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.017G029100.2
Entrez Gene	18106909

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]