PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G031000.1

Common Name

POPTR_0017s05970g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 255aa MW: 30117.1 Da PI: 6.3511

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G031000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.7	2.1e-27	2	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +p GfrF+Ptdeel+ + L +k++g++++l ++i e ++y+ eP+dL+ + ++ ++ e y++++r+++y+ + + +g Wkat + Potri.017G031000.1 2 VPHGFRFNPTDEELI-QVLDRKASGQEMPL-HFILERNVYEREPQDLEwNqTAPLSNGERYYYCTRETNYS-----REVLGRGWWKATSHV 85 589**********.88********.89**********9542333466699**99995.....347889***** PP NAM 90 kevlsk..kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 k+++++ ++ lvg k+ L f+ + ++++++kt+W+m ey+l Potri.017G031000.1 86 KKIHANndDQLLVGNKRPLKFHrfkdnERNRNNAVKTNWIMYEYSL 131 98544555******7776556778889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.488	2	146	IPR003441	NAC domain
SuperFamily	SSF101941	1.18E-31	2	146	IPR003441	NAC domain
Pfam	PF02365	3.6E-16	3	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVPHGFRFNP TDEELIQVLD RKASGQEMPL HFILERNVYE REPQDLEWNQ TAPLSNGERY 60 YYCTRETNYS REVLGRGWWK ATSHVKKIHA NNDDQLLVGN KRPLKFHRFK DNERNRNNAV 120 KTNWIMYEYS LESRTTDWRL CKIKHKGKPS VQEEMESMRE QYSSRNDFEA GSSTNFVGGQ 180 QQQEQTSLPT NYEGYDHHQS YYQWNNMQQS PPSPYDPSLP APPSTSSGHY YVEQQEKLEP 240 SDEHPFPSLW SWTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-17	2	146	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-17	2	146	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-17	2	146	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-17	2	146	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	9e-18	2	146	20	168	NAC domain-containing protein 19
3swm_B	9e-18	2	146	20	168	NAC domain-containing protein 19
3swm_C	9e-18	2	146	20	168	NAC domain-containing protein 19
3swm_D	9e-18	2	146	20	168	NAC domain-containing protein 19
3swp_A	9e-18	2	146	20	168	NAC domain-containing protein 19
3swp_B	9e-18	2	146	20	168	NAC domain-containing protein 19
3swp_C	9e-18	2	146	20	168	NAC domain-containing protein 19
3swp_D	9e-18	2	146	20	168	NAC domain-containing protein 19
4dul_A	1e-17	2	146	17	165	NAC domain-containing protein 19
4dul_B	1e-17	2	146	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G031000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	0.0	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444763.1	0.0	NAC domain-containing protein 83-like
TrEMBL	B9MY23	0.0	B9MY23_POPTR; Uncharacterized protein
STRING	POPTR_0017s05970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15526	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-21	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Potri.017G031000.1
Entrez Gene	18106928